Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_010342.1 Length=39245 Score E Sequences producing significant alignments: (Bits) Value seq33712 190 5e-44 seq200661 161 2e-35 seq194231 107 5e-19 seq201839 105 2e-18 >seq33712 Length=1189 Score = 190 bits (210), Expect = 5e-44 Identities = 243/329 (74%), Gaps = 17/329 (5%) Strand=Plus/Minus Query 21289 TCATTCAGTGGATGGGCGGCAAGCGCCGCCTGGCTAAACATATCCTGCCGAACTTCCCTG 21348 |||||| ||| ||||||||||||| ||| ||||| | | | |||||| |||| || Sbjct 390 TCATTCCCTGGCTGGGCGGCAAGCGTCGCTTGGCTGATCGCCTTCTGCCGTACTTTCCGC 331 Query 21349 ACCACCAGTGCTACGTTGAGCCCTTCGCGGGCGGCGCGGCGCTGTTCTTCATGAAGC--A 21406 |||||||||||||| || || ||||| |||||||| || ||||||| || || | Sbjct 330 CTCACCAGTGCTACGTCGAACCGTTCGCAGGCGGCGCAGCCATGTTCTTTCTGCGGCCTA 271 Query 21407 ACCCAGCAAA-GTGGAGGTGATCAACGACACCAACAGCGACCTGGTCAACTTGTACCGGG 21465 || || | || ||||| |||||||| |||| | || ||| ||||| | || |||| Sbjct 270 TGCCGGCCGACGTCGAGGTTCTCAACGACGTCAACGGAGAACTGATCAACCTCTATCGGG 211 Query 21466 TGGTGCAGCACCACCTGGAGGAGTTCGTGCGCCAGTTCAAGTGGGCGCTGGTCTCG-CGT 21524 ||||| |||| ||||||||||| ||||| ||||||||||| |||||||| ||| | || Sbjct 210 TGGTGAAGCATCACCTGGAGGAATTCGTACGCCAGTTCAAATGGGCGCT-GTCGAGCCGA 152 Query 21525 GAGATGTTCGCGTGGGAGAAGCTCAAG--CACACC----GACACGCTAACGGATATCCAG 21578 || ||||| || |||| || |||||| || || || || || |||||| Sbjct 151 CAGGTGTTCAAATG------GCTCCAGATCACACCTGAGGAGACCCTGACCGACATCCAG 98 Query 21579 CGGGCCGCGCGGTTCTACTACCTGCAGCA 21607 |||||||| |||||| ||| || ||||| Sbjct 97 CGGGCCGCCAGGTTCTTCTATCTACAGCA 69 >seq200661 Length=255 Score = 161 bits (178), Expect = 2e-35 Identities = 168/220 (76%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 21282 AAACCATTCATTCAGTGGATGGGCGGCAAGCGCCGCCTGGCTAAACATATCCTGCCGAAC 21341 ||||| |||||| ||| |||| ||||||||||||||||| | | || || || Sbjct 36 AAACCGATCATTCCCTGGCTGGGTGGCAAGCGCCGCCTGGCCGACAAGATTCTTCCCCTT 95 Query 21342 TTCCCTGACCACCAGTGCTACGTTGAGCCCTTCGCGGGCGGCGCGGC---GCTGTTCTTC 21398 || || | || |||||||| ||||| ||||||||||| ||||| ||| ||| | Sbjct 96 TTTCCCAAGCATTCCTGCTACGTCGAGCCATTCGCGGGCGGGGCGGCATTGCTTTTCGCC 155 Query 21399 ATGAAGCAACCCAGCAAAGTGGAGGTGATCAACGACACCAACAGCGACCTGGTCAACTTG 21458 | | | | || ||| ||||||||| | ||||||| |||| |||||||||||||| || Sbjct 156 AGGTCGGAGCCGGCCAAGGTGGAGGTGCTGAACGACATCAACGGCGACCTGGTCAACCTG 215 Query 21459 TACCGGGTGGTGCAGCACCACCTGGAGGAGTTCGTGCGCC 21498 |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 216 TACCGGGTAGTGCAACACCACCTGGAGGAATTCGTCCGCC 255 >seq194231 Length=202 Score = 107 bits (118), Expect = 5e-19 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 21478 ACCTGGAGGAGTTCGTGCGCCAGTTCAAGTGGGCGCTGGTCTCGCGTGAGATGTTCGCGT 21537 |||||||||| ||||| ||||||||||||||||||||| | || |||||||| || Sbjct 1 ACCTGGAGGAATTCGTCCGCCAGTTCAAGTGGGCGCTGACCAGCCGGCAGATGTTCAAGT 60 Query 21538 GGGAGAAGCTCAAGCACACCGACACGCTAACGGATATCCAGCGGGCCGCGCGGTTCTACT 21597 || |||| | || |||| ||||| || ||||| |||||||| || || ||||||| Sbjct 61 GGCAGAAAGAAACGCGGCCCGAGACGCTGACTGATATTCAGCGGGCGGCCCGCTTCTACT 120 Query 21598 ACCTGCAGCAGCAGGGGTTTGGCGGGAAG 21626 ||||| |||| | | || |||| ||| Sbjct 121 ACCTGATGCAGAACTGCTTCAGCGGCAAG 149 >seq201839 Length=207 Score = 105 bits (116), Expect = 2e-18 Identities = 131/177 (74%), Gaps = 3/177 (2%) Strand=Plus/Plus Query 21289 TCATTCAGTGGATGGGCGGCAAGCGCCGCCTGGCTAAACATATCCTGCCGAACTTCCCTG 21348 |||||| |||| | |||||||||||||||||||| | | | | || ||| | ||||| Sbjct 31 TCATTCCGTGGCTCGGCGGCAAGCGCCGCCTGGCCGACCGTCTGCTTCCGTATTTCCCAC 90 Query 21349 ACCACCAGTGCTACGTTGAGCCCTTCGCGGGCGGCGCGGCGCTGTTCTTCATGAAG--CA 21406 |||||||||||| || ||||| ||||| ||||| ||||| |||||||| || | || Sbjct 91 CCCACCAGTGCTATGTCGAGCCGTTCGCCGGCGGGGCGGCCATGTTCTTCCTGCGGCCCA 150 Query 21407 ACCCAG-CAAAGTGGAGGTGATCAACGACACCAACAGCGACCTGGTCAACTTGTACC 21462 | | | | || || || |||||||| ||| |||| ||| | ||| |||||| Sbjct 151 TGGCGGCCGACGTTGAAGTACTCAACGACGTCAATGGCGAGCTGATAAACCTGTACC 207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125117814852324