Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_011216.1 Length=37635 Score E Sequences producing significant alignments: (Bits) Value seq29732 123 6e-24 seq49420 98.7 2e-16 seq201347 89.7 1e-13 seq188774 86.0 2e-12 seq210840 80.6 6e-11 >seq29732 Length=1354 Score = 123 bits (136), Expect = 6e-24 Identities = 220/317 (69%), Gaps = 8/317 (3%) Strand=Plus/Plus Query 14682 GTTCGACGAGCGCCTGCAGGCGGCGAAGACCCTCATCGACGAGTGCATCAACGAATGGGC 14741 |||||||||||||||||| | |||||||||||| |||||||||||||||| ||| | Sbjct 452 GTTCGACGAGCGCCTGCATGGGGCGAAGACCCTGATCGACGAGTGCATCACGTCCTGGTC 511 Query 14742 GCGCGGCA---GCGATCCGAAGATCCAGGTGCTGGTTCAGCAGGCGTTCGAGACGGACAA 14798 | | ||||| ||||| |||||||||| | | || ||| | ||| || Sbjct 512 TGAAGACTCGCGCGATG---AGATCAAGGTGCTGGTGAACGATGCATTCCGGGTGGATAA 568 Query 14799 GGAAGGCAAGATCAACGTCGGC-CGCGTACTTGCGCTGCGCCGCTTGGAGATCACGGACG 14857 || ||| |||||||| |||| ||||| || | ||||| || | |||| ||| | Sbjct 569 GGCCGGCCAGATCAACA-CGGCTCGCGTGCTCGGCCTGCGTCGTCTTCCCATCAAGGATG 627 Query 14858 ACAAGTGGCAACGCGCCATGCAGGCGATCGGCGAGTCGGTGCAGGTCGTCGGCACGAAGA 14917 | ||||| || |||||| |||||| |||| ||| || | | || || Sbjct 628 ATCGCTGGCAGCGTGCCATGGCCGCGATCAGCGACAGCGTGAGCGTGGCCAACAGCAAAC 687 Query 14918 CGTATATGCGCTTCTACGAGCGCGTCGAGGGCAGCGAACAATACACGCCGATCAGCCTCG 14977 |||| |||| ||||||||||| ||||||| || | |||||||||||| |||| | Sbjct 688 CGTACGTGCGGTTCTACGAGCGGCGCGAGGGCTCGGACGAGTACACGCCGATCTGCCTGG 747 Query 14978 ACTTCGCGTCGCTGTGA 14994 | ||||| || | ||| Sbjct 748 ATATCGCGGCGGTTTGA 764 >seq49420 Length=746 Score = 98.7 bits (108), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 15594 GGGCTTCGGCACCTTTGCCGTGGCAGCGCGCAAAGCACGCACCGGCCGCAATCCGGCGAC 15653 |||||||||||| ||||||||| | || ||| || |||||||||||||||||| || Sbjct 153 GGGCTTCGGCACGTTTGCCGTGTCGGCTCGCGCTGCTCGCACCGGCCGCAATCCGCGCAC 94 Query 15654 GGGCGAATCGATCCAGATC--GCCGCCAGCAAGGCCGTGAAATTCAAGCCCGGCAAGGCA 15711 ||||||| | ||| ||||| | | | ||||| ||| ||| || |||||||| Sbjct 93 GGGCGAAACCATCAAGATCAAGAAGGC--CAAGGTGCCGAAGTTCCGTCCGGGCAAGGCC 36 Query 15712 CTGAAAGACGCCGTGAACTGAT 15733 ||||| |||||||| |||| || Sbjct 35 CTGAAGGACGCCGTCAACTAAT 14 >seq201347 Length=207 Score = 89.7 bits (98), Expect = 1e-13 Identities = 117/161 (73%), Gaps = 12/161 (7%) Strand=Plus/Plus Query 14585 AGTACGACGTGAAGATCGGCGGGGCCAAGGGCAACGTGACGTTGCATTCGTTTGACGGTG 14644 |||||| || ||||||||||| | |||||||||||| | || |||| | || || Sbjct 11 AGTACGGCGCCAAGATCGGCGGCGACAAGGGCAACGTCAGCCTGTATTCCTACGATGGC- 69 Query 14645 CGCTGAAGGTCGTCATCCAGCGCGC------GGAAAACATGTCGTTCGACGAGCGCCTGC 14698 |||| | | |||| |||||| ||| | ||| |||||| |||||||||| Sbjct 70 CGCTTCAAG-----ATCCTGCGCGCCTGCCAGGACACCATCCAGTTCGATGAGCGCCTGC 124 Query 14699 AGGCGGCGAAGACCCTCATCGACGAGTGCATCAACGAATGG 14739 |||| || ||| |||||||||| |||||| | ||||| ||| Sbjct 125 AGGCCGCCAAGGCCCTCATCGATGAGTGCCTGAACGACTGG 165 >seq188774 Length=209 Score = 86.0 bits (94), Expect = 2e-12 Identities = 132/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 6770 GGGTTGTACGGATCGTTGTCGCGC-AG-GCCGGGATATGCACCGCTAATCCAGCCTGCTG 6827 || ||| | ||| |||| | |||| || |||||| | || | || | |||||| | | Sbjct 1 GGATTGAAAGGAGCGTTCT-GCGCCAGCGCCGGGTAAAGCCCAGCGA-TCCAGCTGGAGG 58 Query 6828 TCGACGGCATGAACTGCGCCAAGCCTTCCGCACCTACCGGGCTCTTTGCGTTGGCCCGCC 6887 ||| |||||||||||| |||| ||||| || || || | ||| || |||| Sbjct 59 TCGCCGGCATGAACTGGGCCATGCCTTGGGCGCCCACGGCAGAGACGGCGCCGGGGCGCC 118 Query 6888 AGCGGCTTTCCTGATGGATCTGTCCGGCGAACGTTGCGACCGGCGCTTCGAGCCCCCAGA 6947 || ||| ||||||||||||||| |||||||||| | |||||| || || | ||||| | Sbjct 119 AGGCGCTCTCCTGATGGATCTGTGCGGCGAACGTCGAGACCGGTGCGTCCATGCCCCAAA 178 Query 6948 CGA 6950 ||| Sbjct 179 CGA 181 >seq210840 Length=235 Score = 80.6 bits (88), Expect = 6e-11 Identities = 123/173 (71%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 29702 GGCGATCTGGTGTCGTGCTCGGCGATCCACCAGGGAGGCCAGTGGCGCAACGCTCGGCTC 29761 ||||| |||||| ||||||| |||||| | || |||||| |||| ||||| Sbjct 62 GGCGACCTGGTGGACAGCTCGGCCATCCACGGCAGCGGTCAGTGGAAAAACGTGCGGCTG 121 Query 29762 GACACCATCGCGCGCGACATCTGCAAACCGTTCGGCATCGAGGTGAAGGTCGAAACCGAC 29821 || |||| ||| ||||||||||| ||||||||||| || ||| ||| |||| || Sbjct 122 GAGCAGATCGTGCGTGACATCTGCAAGCCGTTCGGCATTGAAGTGCTGGTGCAAACGGAT 181 Query 29822 ATCGGCGAGCCGATCCAGGA-TTTCAAGATTCAGCACGGCGAGAAGGCGGTCG 29873 | ||||| |||| ||| | ||| | | | |||| ||||||||| ||| Sbjct 182 ACTGGCGACGCGAT-CAGCAGCTTCTCGCTGGACGACGGTGAGAAGGCGTTCG 233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 119979964929804