Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq142870 179 4e-40 seq8367 104 2e-17 seq1 91.5 1e-13 >seq142870 Length=314 Score = 179 bits (198), Expect = 4e-40 Identities = 215/287 (75%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 28010 TATTTCGTCGAGTGGGGCGTGTATCTGCGGCAGTTTC-CCGTCGACAAAGTGCCCGCGCC 28068 |||||||||||||||||||| || | | ||| |||| |||||||||| | || |||| Sbjct 293 TATTTCGTCGAGTGGGGCGTTTA-CGGGCGCAATTTCACCGTCGACAAGATCCCGGCGCA 235 Query 28069 CAACCTGTCGCACTTGCTGTACGGTTTCGTGCCGATATGCGGCGGCGACGGCATAAACGA 28128 |||||| | ||| |||||||||| || | ||||| ||||||||| | ||||| ||||| Sbjct 234 AAACCTGACCCACCTGCTGTACGGCTTTATCCCGATCTGCGGCGGCAATGGCATCAACGA 175 Query 28129 CGCCCTCAAGACCGTTC-CCGGCAGTTTCGAGGCGCTGCAGCGCTCGTGCGCCGGGCGCG 28187 | ||| || | | || ||||||||| |||| |||||||||| || || |||| Sbjct 174 CAGCCTGAA-AGAGATCGAAGGCAGTTTCCAGGCCTTGCAGCGCTCCTGTCAGGGCCGCG 116 Query 28188 CCGACTTCAAGGTGACGATCCACGATCCCTGGGCCGCCATTCAGAAGCCGCAAAAGGGCG 28247 |||||||| || ||||||||||||| | ||||| | || || |||| ||||||| Sbjct 115 AGGACTTCAAAGTCTCGATCCACGATCCGTTCGCCGCGCTGCAAAAAGCGCAGAAGGGCG 56 Query 28248 TCTCTACGTGGAACGAGCCGTACAAAGGCAACTTTGGGCAATTGATG 28294 | | | ||| | || || ||||| |||||||| || || ||||| Sbjct 55 TGACCGCCTGGGATGACCCCTACAAGGGCAACTTCGGCCAGCTGATG 9 >seq8367 Length=9740059 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || |||| || | || | | | |||||||| || ||||||||||| Sbjct 8893217 GCCACCTCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 8893158 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || ||| ||| || || || || || | | |||| || | ||| || || ||||| Sbjct 8893157 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 8893098 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| |||||| || | | ||| | |||||| | | ||| || Sbjct 8893097 AATGCCTTCCTTGTCTTGGATTTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAAC 8893038 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||||| || | || || |||||||| || || ||||| ||||||||| || Sbjct 8893037 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGCCT 8892986 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || || || || || || || | Sbjct 8892955 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCG 8892896 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| || || ||||| || ||||| ||||| |||||| || | Sbjct 8892895 AAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGGATTTTGGCCTTCACA 8892836 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | |||||| | | ||| ||||||| || | || || |||||||| || || Sbjct 8892835 TTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 8892776 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 8892775 ACAAAGATCTGCATG 8892761 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || || || ||||||||||| || || ||| ||| || || || || || | | Sbjct 8893639 GATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCA 8893580 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| || || ||||| || ||||||||||| ||| || || | Sbjct 8893579 AAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACA 8893520 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| ||||| | || | || || ||||| || ||||| Sbjct 8893519 TTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTAAGGGTTTTC 8893460 Query 138601 ACAAAAATCTGCATGGCT 138618 ||||| ||||||||| || Sbjct 8893459 ACAAAGATCTGCATGCCT 8893442 >seq1 Length=190651702 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 153642 TACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTG 153701 |||| ||| ||||| | ||| || ||||||||||| ||| ||||| || ||||||||| Sbjct 189193130 TACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 189193189 Query 153702 CTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 153751 ||||| | ||||| | ||||||| | |||||||| || ||| ||||| Sbjct 189193190 CTTTTCCTGTTGCAGGAGTCTTTGTACAGCATGTAAGGCGTGCCAGTCTC 189193239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494827668181920