Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq33712 141 2e-29 seq200661 131 4e-26 seq97974 123 6e-24 seq97973 123 6e-24 seq22397 123 6e-24 seq201839 87.8 5e-13 seq194231 87.8 5e-13 >seq33712 Length=1189 Score = 141 bits (156), Expect = 2e-29 Identities = 241/344 (70%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 24791 CCAATCATTTCCTGGCCGGGCGGCAAGCGCCGCCTC-CTGAAGCACCTCTATCCGCACTT 24849 || |||||| |||||| |||||||||||| ||| | |||| | ||| ||| |||| Sbjct 394 CCCATCATTCCCTGGCTGGGCGGCAAGCGTCGCTTGGCTGATCGCCTTCTG-CCGTACTT 336 Query 24850 CCCGACCCACGACTGCTACGTCGAGGCATTCGCCGGCGGTGCCGCGTCGTTGCTTATGCG 24909 ||| | ||| | ||||||||||| | ||||| ||||| || || ||| || |||| Sbjct 335 TCCGCCTCACCAGTGCTACGTCGAACCGTTCGCAGGCGGCGCAGCCATGTTCTTTCTGCG 276 Query 24910 GCCGTACCCAGCACAGATGGAGGTGCTCAACGACATCAACGGCGAGCTGGTGTCCCTGTA 24969 ||| || || | | ||||| ||||||||| ||||||| || ||| | ||| || Sbjct 275 GCCTATGCCGGCCGACGTCGAGGTTCTCAACGACGTCAACGGAGAACTGATCAACCTCTA 216 Query 24970 CCGCTGCGTGCGCCACCACCTGGATGAGTTCGTGCGCATGTTCCGCTGGTCCCTGGTCTC 25029 || ||| || |||||||| || ||||| ||| |||| ||| | ||| || Sbjct 215 TCGGGTGGTGAAGCATCACCTGGAGGAATTCGTACGCCAGTTCAAATGGGCGCTG-TCGA 157 Query 25030 GC-GACAGATGTTCGAGTGGGCACAGATGGAGCGCCCGGAGACGCTGACCGACATCCAGC 25088 || ||||| ||||| | ||| ||||| | |||||| |||||||||||||||| Sbjct 156 GCCGACAGGTGTTCAAATGGCTCCAGATCACACCTGAGGAGACCCTGACCGACATCCAGC 97 Query 25089 GCGCAGCGCGGTTCTACTACCTGCAAAAGCTGGCATTCGGCGGC 25132 | || || |||||| ||| || || | ||| ||||| ||| Sbjct 96 GGGCCGCCAGGTTCTTCTATCTACAGCACTCGGCTTTCGGTGGC 53 >seq200661 Length=255 Score = 131 bits (144), Expect = 4e-26 Identities = 169/228 (74%), Gaps = 8/228 (4%) Strand=Plus/Plus Query 24783 TGCCAAAGCCAATCATTTCCTGGCCGGGCGGCAAGCGCCGCCTC-CTGAAGCACCTCTAT 24841 || |||| || |||||| |||||| ||| |||||||||||||| | || ||| | Sbjct 31 TGGCAAAACCGATCATTCCCTGGCTGGGTGGCAAGCGCCGCCTGGCCGACAAGATTCT-T 89 Query 24842 CCGCACTTCCCGACCCACGACTGCTACGTCGAGGCATTCGCCGGCGGTGCCGCGTCGTTG 24901 || | || || | || ||||||||||||| ||||||| ||||| ||| | ||| Sbjct 90 CCCCTTTTTCCCAAGCATTCCTGCTACGTCGAGCCATTCGCGGGCGG---GGCGGCATTG 146 Query 24902 CTTAT-GC--GGCCGTACCCAGCACAGATGGAGGTGCTCAACGACATCAACGGCGAGCTG 24958 ||| | || || || | || || || |||||||||| ||||||||||||||||| ||| Sbjct 147 CTTTTCGCCAGGTCGGAGCCGGCCAAGGTGGAGGTGCTGAACGACATCAACGGCGACCTG 206 Query 24959 GTGTCCCTGTACCGCTGCGTGCGCCACCACCTGGATGAGTTCGTGCGC 25006 || ||||||||| |||| ||||||||||| || ||||| ||| Sbjct 207 GTCAACCTGTACCGGGTAGTGCAACACCACCTGGAGGAATTCGTCCGC 254 >seq97974 Length=5578 Score = 123 bits (136), Expect = 6e-24 Identities = 256/372 (69%), Gaps = 17/372 (5%) Strand=Plus/Minus Query 28564 CGCAGACCATCGAGGTAATCCGCCCAGACCTGCATCATCCGCACGCGCTCCTGCAGGTGC 28623 ||||| | || || || |||||||| |||||||||| | |||||||| | | | Sbjct 1123 CGCAGCACGTCCAGATAGTCCGCCCATGCCTGCATCATGCTGCGGCGCTCCTTGATGAAC 1064 Query 28624 GATGTGCGGTTGTAGGCCCGGCCGTTGGGATCCTTCACCGCGTGAGCAAGCTGGTGCTCG 28683 ||||||||||||||| ||| ||||| ||| ||||| || |||||||||||| Sbjct 1063 TTGGTGCGGTTGTAGGCCGCGCCCAGCAGATCCGGCACGGCGTGGGCTAGCTGGTGCTCG 1004 Query 28684 ATGATGTCCGGGCGGAAGTGCAGGACCTCGTCCAGAATGGTGCGAGCCGTCGCGCGGAAG 28743 |||| ||||| | ||| |||| | ||| |||||||| ||| |||| |||||| Sbjct 1003 ATGACTTCCGGCTTTTGGCCCAGTTCCTCATGCAGGATGGTGCGCGCCATCGCCCGGAAG 944 Query 28744 CCGTGGCCGGTCATCATCGTGCG---GTCGTAACCCATGTTGCGCAGCGCTGCGGT-AAC 28799 ||||||||||| || || || |||||| |||||| ||| | || || | | | Sbjct 943 CCGTGGCCGGTGATTTCGGTTCGGGTGTCGTATCCCATGCGGCGTAAGGCCGCATTGATC 884 Query 28800 GGCGTTCTCTGACATCGGGCGTT--TGGAATCGCGGGCGCCAGAGAACACCCACTTGTGC 28857 | || | | ||||||||| | ||| ||| || || | ||||| | | || Sbjct 883 GCCGCGC-CGCTCATCGGGCGGTCATGGCTACGC--GCCCCCGGAAACAC---ATAGCGC 830 Query 28858 C---GGCCGGTGATCGGCTTG-ATGTCCTCCAGGATCTGCAGCGCCTGCCTGGACAGCGG 28913 | ||||||| | ||| || | ||| ||||| | || |||||| |||||||| || Sbjct 829 CCGTGGCCGGTTA-GGGCGTGTAGGTCGCGCAGGACCGCCACCGCCTGGCTGGACAGGGG 771 Query 28914 CACCAGGTGCGC 28925 ||| ||||| || Sbjct 770 CACAAGGTGGGC 759 >seq97973 Length=3649 Score = 123 bits (136), Expect = 6e-24 Identities = 256/372 (69%), Gaps = 17/372 (5%) Strand=Plus/Minus Query 28564 CGCAGACCATCGAGGTAATCCGCCCAGACCTGCATCATCCGCACGCGCTCCTGCAGGTGC 28623 ||||| | || || || |||||||| |||||||||| | |||||||| | | | Sbjct 3081 CGCAGCACGTCCAGATAGTCCGCCCATGCCTGCATCATGCTGCGGCGCTCCTTGATGAAC 3022 Query 28624 GATGTGCGGTTGTAGGCCCGGCCGTTGGGATCCTTCACCGCGTGAGCAAGCTGGTGCTCG 28683 ||||||||||||||| ||| ||||| ||| ||||| || |||||||||||| Sbjct 3021 TTGGTGCGGTTGTAGGCCGCGCCCAGCAGATCCGGCACGGCGTGGGCTAGCTGGTGCTCG 2962 Query 28684 ATGATGTCCGGGCGGAAGTGCAGGACCTCGTCCAGAATGGTGCGAGCCGTCGCGCGGAAG 28743 |||| ||||| | ||| |||| | ||| |||||||| ||| |||| |||||| Sbjct 2961 ATGACTTCCGGCTTTTGGCCCAGTTCCTCATGCAGGATGGTGCGCGCCATCGCCCGGAAG 2902 Query 28744 CCGTGGCCGGTCATCATCGTGCG---GTCGTAACCCATGTTGCGCAGCGCTGCGGT-AAC 28799 ||||||||||| || || || |||||| |||||| ||| | || || | | | Sbjct 2901 CCGTGGCCGGTGATTTCGGTTCGGGTGTCGTATCCCATGCGGCGTAAGGCCGCATTGATC 2842 Query 28800 GGCGTTCTCTGACATCGGGCGTT--TGGAATCGCGGGCGCCAGAGAACACCCACTTGTGC 28857 | || | | ||||||||| | ||| ||| || || | ||||| | | || Sbjct 2841 GCCGCGC-CGCTCATCGGGCGGTCATGGCTACGC--GCCCCCGGAAACAC---ATAGCGC 2788 Query 28858 C---GGCCGGTGATCGGCTTG-ATGTCCTCCAGGATCTGCAGCGCCTGCCTGGACAGCGG 28913 | ||||||| | ||| || | ||| ||||| | || |||||| |||||||| || Sbjct 2787 CCGTGGCCGGTTA-GGGCGTGTAGGTCGCGCAGGACCGCCACCGCCTGGCTGGACAGGGG 2729 Query 28914 CACCAGGTGCGC 28925 ||| ||||| || Sbjct 2728 CACAAGGTGGGC 2717 >seq22397 Length=2137 Score = 123 bits (136), Expect = 6e-24 Identities = 256/372 (69%), Gaps = 17/372 (5%) Strand=Plus/Minus Query 28564 CGCAGACCATCGAGGTAATCCGCCCAGACCTGCATCATCCGCACGCGCTCCTGCAGGTGC 28623 ||||| | || || || |||||||| |||||||||| | |||||||| | | | Sbjct 1569 CGCAGCACGTCCAGATAGTCCGCCCATGCCTGCATCATGCTGCGGCGCTCCTTGATGAAC 1510 Query 28624 GATGTGCGGTTGTAGGCCCGGCCGTTGGGATCCTTCACCGCGTGAGCAAGCTGGTGCTCG 28683 ||||||||||||||| ||| ||||| ||| ||||| || |||||||||||| Sbjct 1509 TTGGTGCGGTTGTAGGCCGCGCCCAGCAGATCCGGCACGGCGTGGGCTAGCTGGTGCTCG 1450 Query 28684 ATGATGTCCGGGCGGAAGTGCAGGACCTCGTCCAGAATGGTGCGAGCCGTCGCGCGGAAG 28743 |||| ||||| | ||| |||| | ||| |||||||| ||| |||| |||||| Sbjct 1449 ATGACTTCCGGCTTTTGGCCCAGTTCCTCATGCAGGATGGTGCGCGCCATCGCCCGGAAG 1390 Query 28744 CCGTGGCCGGTCATCATCGTGCG---GTCGTAACCCATGTTGCGCAGCGCTGCGGT-AAC 28799 ||||||||||| || || || |||||| |||||| ||| | || || | | | Sbjct 1389 CCGTGGCCGGTGATTTCGGTTCGGGTGTCGTATCCCATGCGGCGTAAGGCCGCATTGATC 1330 Query 28800 GGCGTTCTCTGACATCGGGCGTT--TGGAATCGCGGGCGCCAGAGAACACCCACTTGTGC 28857 | || | | ||||||||| | ||| ||| || || | ||||| | | || Sbjct 1329 GCCGCGC-CGCTCATCGGGCGGTCATGGCTACGC--GCCCCCGGAAACAC---ATAGCGC 1276 Query 28858 C---GGCCGGTGATCGGCTTG-ATGTCCTCCAGGATCTGCAGCGCCTGCCTGGACAGCGG 28913 | ||||||| | ||| || | ||| ||||| | || |||||| |||||||| || Sbjct 1275 CCGTGGCCGGTTA-GGGCGTGTAGGTCGCGCAGGACCGCCACCGCCTGGCTGGACAGGGG 1217 Query 28914 CACCAGGTGCGC 28925 ||| ||||| || Sbjct 1216 CACAAGGTGGGC 1205 >seq201839 Length=207 Score = 87.8 bits (96), Expect = 5e-13 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 24791 CCAATCATTTCCTGGCCGGGCGGCAAGCGCCGCCTCCTGAAGCACCTCTATCCGCACTTC 24850 || |||||| | |||| ||||||||||||||||| | | || |||| | ||| Sbjct 27 CCCATCATTCCGTGGCTCGGCGGCAAGCGCCGCCTGGCCGACCGTCTGCTTCCGTATTTC 86 Query 24851 CCGACCCACGACTGCTACGTCGAGGCATTCGCCGGCGGTGCCGCGTCGTTGCTTATGCGG 24910 || ||||| | ||||| |||||| | ||||||||||| || || ||| | ||||| Sbjct 87 CCACCCCACCAGTGCTATGTCGAGCCGTTCGCCGGCGGGGCGGCCATGTTCTTCCTGCGG 146 Query 24911 CCGTACCCAGCACAGATGGAGGTGCTCAACGACATCAACGGCGAGCTGGTGTCCCTGTAC 24970 || | || | | || || ||||||||| |||| ||||||||| | ||||||| Sbjct 147 CCCATGGCGGCCGACGTTGAAGTACTCAACGACGTCAATGGCGAGCTGATAAACCTGTAC 206 Query 24971 C 24971 | Sbjct 207 C 207 >seq194231 Length=202 Score = 87.8 bits (96), Expect = 5e-13 Identities = 127/175 (73%), Gaps = 12/175 (7%) Strand=Plus/Plus Query 24987 ACCTGGATGAGTTCGTGCGCATGTTCCGCTGGTCCCTGGTCTCGCGACAGATGTTCGAGT 25046 ||||||| || ||||| ||| |||| ||| | ||| | || ||||||||| ||| Sbjct 1 ACCTGGAGGAATTCGTCCGCCAGTTCAAGTGGGCGCTGACCAGCCGGCAGATGTTCAAGT 60 Query 25047 GGGCACAGATGGA---GCGCCCGGAGACGCTGACCGACATCCAGCGCGCAGCGCGGTTCT 25103 || |||| || ||| || ||||||||||| || || ||||| || || || |||| Sbjct 61 GG---CAGAAAGAAACGCGGCCCGAGACGCTGACTGATATTCAGCGGGCGGCCCGCTTCT 117 Query 25104 ACTACC---TGCAAAAGCTGGCATTCGGCGGCAAGGTGCAGGGGCAATCGTTCGG 25155 |||||| |||| || ||| ||| |||||||| || |||| || ||||||| Sbjct 118 ACTACCTGATGCAGAA-CTG--CTTCAGCGGCAAGCTGGAGGGTCAGACGTTCGG 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128443056851868