Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_011611.1 Length=36885 Score E Sequences producing significant alignments: (Bits) Value seq38063 116 9e-22 seq142977 91.5 3e-14 seq139399 82.4 2e-11 >seq38063 Length=1017 Score = 116 bits (128), Expect = 9e-22 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16082 AACGAGCTGCGGCTGCGCGACAACAGCCCGGCCGGCGAAGCCTTGCAGCCCTTCGGCTGG 16141 ||||||||||| ||||||||||||||| | | || ||| | | ||| || |||||| Sbjct 766 AACGAGCTGCGCCTGCGCGACAACAGCGCCGATGGAGAATCGCTCTGGCCGTTTGGCTGG 825 Query 16142 ATCATTCACCGGCCGCGTGCGCGCTCCGGCTATGTGGCCCGCAGCGGCCTGTTCCGCGTG 16201 ||||| ||| || || ||||| |||||| | ||||||| || ||||| || || Sbjct 826 ATCATGCACACGCACCGCTCGCGCAGCGGCTACATCGCCCGCACGGGTCTGTTTCGGGTA 885 Query 16202 CTGGCCTGGCCGTACCTGTTCCGCCACTACGCCACCTCCGACCTGGCGGAAATGCTGGAA 16261 || |||||||||| || ||| ||| ||| ||||||||| || | ||||| Sbjct 886 CTCGCCTGGCCGTGGCTCTTCAAGAACTTTGCCGTGCGCGACCTGGCTGAGTTCCTGGAG 945 Query 16262 ATCTATGGCCTGCCGATCCGGCTGGGGAAATA 16293 ||||| || |||||| | || ||||| | ||| Sbjct 946 ATCTACGGGCTGCCGCTGCGTCTGGGCACATA 977 >seq142977 Length=495 Score = 91.5 bits (100), Expect = 3e-14 Identities = 288/436 (66%), Gaps = 19/436 (4%) Strand=Plus/Minus Query 15679 GCACCCGGCCAAGGGGCTGACGCCGGCCAAGCTGGCTCGCATCCTGGTCGAGGCCGAACA 15738 |||||| || ||| || ||||| |||||||||| | ||||||| || |||||| || Sbjct 454 GCACCCAACCCGGGGCCTCACGCCTTCCAAGCTGGCCCAGATCCTGGACGCGGCCGAGCA 395 Query 15739 GGGCAACCTCCAAGCCCAAGCCGAACTGTTCATGGACATGGAGGAACGCGACGCCCACCT 15798 || ||||| ||||| ||| |||||| ||||||||||||| |||| ||| | Sbjct 394 AGGAGACCTCACGGCCCAGTTCGACCTGTTCGAGGACATGGAGGAAAAGGACGGCCATAT 335 Query 15799 GTTCGCCGAAATGAGCAAGCGAAAGCGCGCAATCCTTGGCCTGGATTGGGCGGTCGAGCC 15858 | |||| ||| ||||||| ||||| ||| |||||| |||| | || ||| Sbjct 334 CGCCTCCGAGATGGGCAAGCGGCGCCGCGC---CCTGATCCTGGACTGGGAGATCACGCC 278 Query 15859 CCCGCGTAACGCCTCGGCGGCC-GAGAAAGC-CGATGCCGACTACCTGCACGAGCTGTTG 15916 || ||||| | || || | ||||| | ||||||| | || ||||||| || Sbjct 277 GCCCGAAAACGC--CAGCACCCTGGAAAAGCGCAATGCCGAGCAGTTGGGCGAGCTGGTG 220 Query 15917 CTCGACCTGGAAGGACTGGAGGACTTGCTGCTCGATGCGCTGGACGGCATCGGCCACGGC 15976 | | | | | || ||||| || | |||| || ||||| ||||||| | ||| Sbjct 219 CAGGCCATACCGGACCTAGAGGATGTGATCTTCGACGCCACGGACGCCATCGGCAAAGGC 160 Query 15977 TACAGCTGCA----TTGAGCTGGAGTGGGCGCTACAGGGGCGCG-AGTGGATGCCGCTGG 16031 | |||| |||| | || | ||| | | |||| | | ||| |||| | | Sbjct 159 T----TTGCAAACCTTGAAATCGAAT-GGCACCGCGAGGGCAAGTACTGGGTGCC-CAAG 106 Query 16032 CGTTCCAC-CACCGGCCGCAGAGCTGGTTCCAGCTCAATCCCGAAGACCAGAACGAGCTG 16090 | ||| |||||||||||| |||||| ||||| | | || | || | || ||| Sbjct 105 AGCATCACGCACCGGCCGCAGTCCTGGTTTCAGCTGCACCGCGGATTCCGCCAGGAACTG 46 Query 16091 CGGCTGCGCGACAACA 16106 || |||||| ||||| Sbjct 45 CGCCTGCGCACCAACA 30 >seq139399 Length=451 Score = 82.4 bits (90), Expect = 2e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 20549 CGCATCCCGACGAACTGGTCTTCGCCCTGCTCAAGGCCGGCAACGCCAATCTCTGCTACG 20608 |||| |||||||| || |||||||| || || |||| ||| ||||| | |||| || Sbjct 3 CGCACCCCGACGAGCTCGTCTTCGCGCTCCTGCAGGCGGGCTTCGCCACGCGGTGCTTCG 62 Query 20609 ACGGTCAAAACTTCTTCGACACCGATCACCCGGTC 20643 |||| || ||||||||||||| |||||||| ||| Sbjct 63 ACGGCCAGTACTTCTTCGACACGGATCACCCTGTC 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117586556580804