Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq142870 132 5e-26 seq8367 123 2e-23 seq7705 102 8e-17 >seq142870 Length=314 Score = 132 bits (146), Expect = 5e-26 Identities = 209/298 (70%), Gaps = 10/298 (3%) Strand=Plus/Minus Query 22322 TATTTTGTCGAGTGGGGAGTGTACCTTCGCCAGTTTCCCGCCGACAAGGTGCCCGTGCCG 22381 ||||| ||||||||||| || ||| ||| | || ||| ||||||| | || | || Sbjct 293 TATTTCGTCGAGTGGGGCGTTTACGGGCGCAATTTCACCGTCGACAAGATCCCGGCGCAA 234 Query 22382 AACCTGTCGCATTTGCTCTACGGTTTCGTGCCAATATGCGGCGGAGACGGCATCAACGAC 22441 |||||| | || |||| ||||| || | || || |||||||| | |||||||||||| Sbjct 233 AACCTGACCCACCTGCTGTACGGCTTTATCCCGATCTGCGGCGGCAATGGCATCAACGAC 174 Query 22442 GCCCTGAAAACGGTGCCGGGAAGCTTCGAGGCGTTGCAACGGTCGTGCGTCAATAGAGCC 22501 ||||||| | | || || ||| |||| ||||| || || | ||| || ||| Sbjct 173 AGCCTGAAAGAGATCGAAGGCAGTTTCCAGGCCTTGCAGCGCTCCT--GTC---AGGGCC 119 Query 22502 -----GATTTCAAGGTGACCATACACGATCCGTGGGCGGCCGTACAAAAACCTCAAAAAG 22556 || ||||| || | || |||||||||| || || | |||||| | || || | Sbjct 118 GCGAGGACTTCAAAGTCTCGATCCACGATCCGTTCGCCGCGCTGCAAAAAGCGCAGAAGG 59 Query 22557 GCGTGTCGTCGTGGAACGAACCGTACAAAGGCAACTTTGGTCAATTGATGGCAGTGAA 22614 ||||| | | ||| | || || ||||| |||||||| || || ||||||| |||| Sbjct 58 GCGTGACCGCCTGGGATGACCCCTACAAGGGCAACTTCGGCCAGCTGATGGCGCTGAA 1 >seq8367 Length=9740059 Score = 123 bits (136), Expect = 2e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||||| || || || ||||| || || ||||| | Sbjct 8892976 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA 8892917 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| | ||||||||||||||| ||||| |||||| Sbjct 8892916 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTG 8892857 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || |||||| ||| | | ||| | |||||| | ||| || |||| ||| | Sbjct 8892856 TCTTGGATTTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 8892797 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || ||||| ||||||||| Sbjct 8892796 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 8892761 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||||| || || || ||||| || || ||||| Sbjct 8893204 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 8893145 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | ||||||||||||||| ||||| |||||| Sbjct 8893144 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTG 8893085 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || |||||| ||| | | ||| | |||||| | ||| || |||| ||| | Sbjct 8893084 TCTTGGATTTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATG 8893025 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || ||||| ||||| || || ||||| ||||||||| || Sbjct 8893024 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGCCT 8892986 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||||||||| || | || |||||||| || || ||||| || || ||||| Sbjct 8893432 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCG 8893373 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | ||||||||||||||| ||||| |||||| Sbjct 8893372 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTG 8893313 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||| | | ||| | ||||| | || || || | ||| | Sbjct 8893312 TCTTGGATCTTGGCCTTCACATTTTCAATAGTGTCACTGGGTTCAACCTCAAGGGTGATG 8893253 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| || || || || ||||| ||||||||| Sbjct 8893252 GTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATG 8893217 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || || ||||| || || ||||| || || ||||| Sbjct 8893660 CGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCG 8893601 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | ||||||||||||||| ||||| || ||| Sbjct 8893600 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTG 8893541 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 || ||| || ||| | | || | |||||| | ||| || || | || | Sbjct 8893540 TCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATG 8893481 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || ||||| || || ||||| ||||| ||||||||| || Sbjct 8893480 GTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCATGCCT 8893442 >seq7705 Length=13065498 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||||| || || || ||||| || || ||||| | Sbjct 4578406 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCA 4578347 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||||||||| || |||||||||||| Sbjct 4578346 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTG 4578287 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | |||| ||| || | || || || | ||| | Sbjct 4578286 TCCTGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATG 4578227 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| |||| || || || || ||||||||| Sbjct 4578226 GTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATG 4578191 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| ||||| || | || ||||| || || || ||||| || || ||||| | Sbjct 4578634 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCA 4578575 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||||| || || |||||||||||| Sbjct 4578574 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGATCAGGGGGAATGCCCTCCTTG 4578515 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| || || ||||| | || | |||||| || |||||| || | || | Sbjct 4578514 TCCTGAATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCCAGAGTGATG 4578455 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || |||| || || ||||| |||||||| Sbjct 4578454 GTCTTACCCGTCAAGGTCTTCACAAAGATCTGCAT 4578420 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | || ||||| || || || ||||| || || ||||| | Sbjct 4578862 CGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCA 4578803 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || ||||| |||||| | |||||||||||| || |||||||||||| Sbjct 4578802 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTG 4578743 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | || | |||||| | || || || | || | Sbjct 4578742 TCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAACGTGATG 4578683 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| |||| || || ||||| |||||||| Sbjct 4578682 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4578648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 474126091524640