Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq6691 127 3e-24 seq8060 100 4e-16 >seq6691 Length=29209805 Score = 127 bits (140), Expect = 3e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || || ||||| | |||||| ||| |||| || || || || ||||| | | || ||| Sbjct 579579 GTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAGATGTCACAG 579638 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || || |||||||||||||||||||| || || |||||||||| || || || || ||| Sbjct 579639 ACTCTATTGTGTTCTCTCAGCCATATCGTTGCATACATCATTAGGCCTGGGACCAAGCCA 579698 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | ||| || | ||| |||| | || || || | || | || | ||| Sbjct 579699 AACACCTCCTGCCCAACAGAAAACTGCAGGTGCTCAGGAACGTGAGGAGGGTAGATCATC 579758 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | | || || || || || || || ||||||||||| || ||||| | ||| Sbjct 579759 TCTGCTTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATCTG 579811 Score = 111 bits (122), Expect = 2e-19 Identities = 202/296 (68%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || || | Sbjct 577564 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAGGGAGGCAG 577623 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| || ||||| ||| | |||| Sbjct 577624 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTGCTTGGCTTCCAATACTCAGGGG 577683 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||| || || |||| || ||||||| || ||||| || || | || | || Sbjct 577684 AGCATATTGTATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCGCCAATTTCTACCATTG 577743 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || | || ||||| || | | ||| | || ||||| | Sbjct 577744 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTACAAGAAGGCCTGGATACAGTTCCA 577803 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| || || || |||| | || ||||| || || || || ||| Sbjct 577804 TAGCATCTATGTCTCCGTAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCT 577859 Score = 93.3 bits (102), Expect = 6e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 ||||| |||||||| | ||| || | | || |||| | ||| ||| ||||| Sbjct 578370 ATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCATGTATCTGAAAAGTG 578429 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| || | |||||| |||| | |||||||| || || || |||||||||||| Sbjct 578430 TCAGGCAGAAGTGGGTGCCAGTGGTACAAAGTATTGAATTCAGCTGCAATTCGGTTCTGG 578489 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 578490 TATTGAAAACGCTGGT--TGAACAGAAGCTCAGGATCAAACTTCAGTTTGAAGTGGTAGC 578547 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | || | || || ||||| | | || | || || || ||||| || || Sbjct 578548 CACTCAAGTGTTGCACATAATCTTCAATAACTATCTTGATCGTTTCTCCTGT 578599 >seq8060 Length=10292962 Score = 100 bits (110), Expect = 4e-16 Identities = 204/303 (67%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 8876 ACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTT 8935 || ||||| || | ||||||| |||||| ||| || | ||| || | | | Sbjct 8604089 ACACGGAATGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTCCAGTGAT 8604030 Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || ||||| || || || | ||||| ||||| ||||| ||||||||| | Sbjct 8604029 GCTGTCTTGACGATCTCGAAGCCGGTTGCTCCGCCAAAGGTACTGGGCTTCCAGTACTCT 8603970 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| ||| | | || || |||| ||||| |||||||| | ||| | Sbjct 8603969 GGGGAGCAGATGGGATTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCCCCAATCTCCACC 8603910 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||||| || || |||||| | ||| | ||||| || | | || || | || | Sbjct 8603909 ATGCTTTCCCCAAAGATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAATCCTGGATAAAAC 8603850 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||| || | ||| ||||| || | |||| ||| || || ||| || ||| ||| Sbjct 8603849 TCCAGAGCATCAATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTTCTCCTCTCCT 8603790 Query 9176 ACA 9178 || Sbjct 8603789 GCA 8603787 Score = 86.0 bits (94), Expect = 9e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 9718 CCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCG 9777 ||| | | ||| || || | || || || | ||||||||||||||| || || || Sbjct 8602323 CCGATGAGGATGAGCCGCGCTGTCTGGAAGAGCTGCTCGTCACCCCAGGAGGGATGCTCC 8602264 Query 9778 TGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATT 9837 || || |||| || ||||| | |||||| || | |||||| | ||||| ||||| Sbjct 8602263 TGCTTCAGAATGTCACAGACACGGTTGTGCTCACGCAGCCAGAGCGTGGCATACATGCAG 8602204 Query 9838 AAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACT 9897 | ||||||| | |||||||||||| | ||||| ||| | || || | ||| | Sbjct 8602203 AGCCCCGGCAGCAGACCAAACACTTCCTGCCCCATTGCCAGCTGCTTCTCCTTGGGGATG 8602144 Query 9898 TCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACA 9949 | |||| || | ||| |||||| | | ||| |||| | || || |||| Sbjct 8602143 GCAGGCGGGTAGACCATGTGCACCGGCGCCTCGGTGACAGATGGTGGGTACA 8602092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 721635648072400