Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq142870 260 1e-64 seq8367 154 1e-32 seq7705 122 9e-23 seq185232 98.7 1e-15 seq2976 84.2 2e-11 >seq142870 Length=314 Score = 260 bits (288), Expect = 1e-64 Identities = 242/307 (79%), Gaps = 0/307 (0%) Strand=Plus/Plus Query 62410 GCCATCAGCTGGCCGAAGTTGCCCTTGTACGGCTCGCTCCACGCGGTCACGCCCTTTTGC 62469 ||||||||||||||||||||||||||||| || || ||| |||||||||||||| ||| Sbjct 7 GCCATCAGCTGGCCGAAGTTGCCCTTGTAGGGGTCATCCCAGGCGGTCACGCCCTTCTGC 66 Query 62470 GGCTTTTGCACGGCCGCCCACGGGTCGTGCACCGCCAGTTTGAAGTCGTCGCGGCCCGCG 62529 | ||||||| || || |||| ||||| | || | ||||||||| ||||||||| Sbjct 67 GCTTTTTGCAGCGCGGCGAACGGATCGTGGATCGAGACTTTGAAGTCCTCGCGGCCCTGA 126 Query 62530 CACGAGCGCTGCAGCGCCTCGAAGCTGCCCGCGATGGACTTGAGGCTGTCGTTGATGCCG 62589 || |||||||||| |||| ||| ||||| |||| || ||||||||||||||||| Sbjct 127 CAGGAGCGCTGCAAGGCCTGGAAACTGCCTTCGATCTCTTTCAGGCTGTCGTTGATGCCA 186 Query 62590 TCCCCGCCGCACATCGGCACGAAGCCGTACAGCAGATGCGTGAGGTTGGGCACGGGCACC 62649 | |||||||| ||||| | |||||||||||||| || || ||||| || | || | | Sbjct 187 TTGCCGCCGCAGATCGGGATAAAGCCGTACAGCAGGTGGGTCAGGTTTTGCGCCGGGATC 246 Query 62650 TTGTCGGCGGGAAACTCGCGTCCGTACACGCCCCACTCGACGAAATAGGCGCCCACCACC 62709 |||||| ||| || | ||| ||||| |||||||||||||||||||| | || || || Sbjct 247 TTGTCGACGGTGAAATTGCGCCCGTAAACGCCCCACTCGACGAAATAAGAACCGACGACT 306 Query 62710 TTGCCGG 62716 ||||||| Sbjct 307 TTGCCGG 313 >seq8367 Length=9740059 Score = 154 bits (170), Expect = 1e-32 Identities = 173/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| |||| || ||| ||| Sbjct 8892990 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCCCAGT 8893049 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | ||||| | || | ||||||| ||||| || || ||||| |||| || Sbjct 8893050 GACACCATTGAAAACG-TGAAGGCCAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCA 8893108 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| |||| ||||||||| |||||||| Sbjct 8893109 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAA 8893168 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| |||||||||| ||||||| ||| Sbjct 8893169 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGAGGTGGC 8893217 Score = 143 bits (158), Expect = 3e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || || || ||||| ||||||||| |||| || ||| | Sbjct 8892758 AAACATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTGAGCC 8892817 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | ||| | || | ||||||| ||||| || || ||||| |||| Sbjct 8892818 CAGTGACACCATTGAAAATGTGAAGGCCAAAATCCAAGACAAGGAAGGCATTCCTCCCGA 8892877 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||| |||| || | ||| ||||| |||||||| || | |||||||| ||||| Sbjct 8892878 TCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCTGTCTGACTA 8892937 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || ||||| |||||||||| |||| || ||| Sbjct 8892938 CAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGGC 8892989 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || || ||||| |||||||| | || || ||| ||| Sbjct 8893446 ATGCAGATCTTTGTGAAAACCCTTACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAGT 8893505 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| |||||||| || ||||| |||| || Sbjct 8893506 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 8893565 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| |||| ||||||||| ||||||||| Sbjct 8893566 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 8893625 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || ||| | || ||||| |||||||||| | ||||| ||| Sbjct 8893626 ATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGCCTCAGAGGTGGC 8893673 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 8893218 ATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 8893277 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | || |||| ||||| || || ||||| |||| || Sbjct 8893278 GACACTATTGAAAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCCGATCAG 8893337 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| |||| |||||||| ||||||||| Sbjct 8893338 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAAC 8893397 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || | || ||||| ||||| |||| |||| || ||| Sbjct 8893398 ATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGAGGGGAGGC 8893445 >seq7705 Length=13065498 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || | || ||||| ||||||||| | || || || || Sbjct 4578189 AACATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAACCC 4578248 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | | | | || | || |||| ||||| ||||| |||||| |||| Sbjct 4578249 AGTGATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGAT 4578308 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | || ||||| |||||||| || | |||||| || |||||| Sbjct 4578309 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCTGACTAC 4578368 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| | || ||||| |||||||||| |||| || || Sbjct 4578369 AACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 4578418 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| |||||||| | || || || ||| Sbjct 4578648 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACGTTGGAGGTTGAACCCAGT 4578707 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| |||||| |||| || Sbjct 4578708 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCA 4578766 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || ||||| |||||||| || | |||||| || |||||||| Sbjct 4578767 GCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCTGACTACAA 4578826 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || ||| | || ||||| |||| || || Sbjct 4578827 CATCCAGAAGGAGTCCACTCTCCATCTTGTCCTGCGCCTGAGGGGTGG 4578874 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | ||||| || |||||||| | || |||||| | | Sbjct 4578420 ATGCAGATCTTTGTGAAGACCTTGACGGGTAAGACCATCACTCTGGAGGTCGAGCCTAGT 4578479 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | ||||| ||||| |||||| | || || Sbjct 4578480 GACACCATTGAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 4578539 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 || |||| || | || ||||| |||||||| || | |||||| || ||||||||| Sbjct 4578540 CAAAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCTGACTACAAC 4578599 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || ||||| |||||||||| |||| || || Sbjct 4578600 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 4578646 >seq185232 Length=256 Score = 98.7 bits (108), Expect = 1e-15 Identities = 178/256 (70%), Gaps = 6/256 (2%) Strand=Plus/Minus Query 61860 GCCGAGCACGATCTTGTC-GGCGGGCACGCCCTGCGCTAACAGCTGACGCACCGCGTTGT 61918 ||||| ||||||||| | ||| | |||||||||| | |||| | ||| |||| Sbjct 256 GCCGACGACGATCTTGCCCGGCTTG-ACGCCCTGCGTCAGCAGCGCATTCACGCCGTTCA 198 Query 61919 CGGCGGTGTAGGGCTCGTCGGGCCGCCACGACGGCGCGTACAGCGCGGTCTGGTGGCCCA 61978 | | |||||||| || || ||| | |||||| | |||||||||||| || |||| Sbjct 197 CCGTGGTGTAGGCGGTATCCGGTTTCCAGGCCGGCGCATTCAGCGCGGTCTGATGCCCCA 138 Query 61979 GCTCGGT--GGTGGACCACGCGCCCTTAAAGTCGTAGCTCATCaaaaaaaTGCGGTCGAG 62036 | | | | | || | ||||| | |||||||||||||||| || ||| | || | Sbjct 137 GGTTCTTCAGATCGA--AGGCGCCATAGAAGTCGTAGCTCATCAGGAAGATGTGATCCAT 80 Query 62037 CGAGCGGTGCGCGCGCCCGTAGTCCACGACGGCGATCTTGTCGTCGCCGGCGCCGATGGC 62096 |||| ||||| ||| |||| | |||||||||| | ||| |||| |||||| Sbjct 79 CGAGTTCTGCGCAACGTTGTAAGCCACCTTGTCGATCTTGTCCTTGCCAGCGCTGATGGC 20 Query 62097 GCTGGTCAGCTCGTAC 62112 | ||||||||| ||| Sbjct 19 GGAGGTCAGCTCATAC 4 >seq2976 Length=93210757 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || ||| || ||||| ||| ||||||||| || ||||| ||||| | || | Sbjct 73918721 CCTCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 73918780 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||||||||| || || || ||||||||||||| ||| || || || || || | Sbjct 73918781 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 73918840 Query 133037 CCACCA 133042 | |||| Sbjct 73918841 CAACCA 73918846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498726762922240