Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3835 134 1e-25 seq9159 120 2e-21 seq210791 104 2e-16 >seq3835 Length=59006440 Score = 134 bits (148), Expect = 1e-25 Identities = 338/509 (66%), Gaps = 10/509 (2%) Strand=Plus/Minus Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 ||| | ||| |||||||| | | | || || ||||||||||| || || || || | Sbjct 52106775 GATGCCAAGCTTGATAAAGGCCAGATCCAGGAGATTGTGCTTGTGGGGGGCTCCACTCGT 52106716 Query 552147 ATTCCTAAAATTCGCGAAATGTTA----AGTTCTTATTTCAATGGTAAAAAATTAAATGA 552202 |||||||| || | ||| ||| || ||| || |||||||||| | | || | Sbjct 52106715 ATTCCTAAGATCC---AAAAGTTGCTGCAGGACTTCTT-CAATGGTAAAGAGCTCAACAA 52106660 Query 552203 AAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTC 552262 || | ||||||||||| |||||||| |||||||| || | ||||||||||| || Sbjct 52106659 GAGCATCAATCCAGATGAAGCTGTTGCTTATGGTGCTGCTGTGCAAGCAGCTATCCTCAT 52106600 Query 552263 TGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCT 552322 ||| | | |||||| | ||| || | | || | ||||| || || || || || Sbjct 52106599 GGGAGACAAGTCTGAAAATGTGCAAGATCTGCTCCTGTTGGATGTCACCCCCCTGTCCCT 52106540 Query 552323 TGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 || | || |||| ||| || | |||||| ||| ||| | | || || || ||||| Sbjct 52106539 GGGCATCGAGACAGCTGGTGGAGTGATGACTGCTCTCATCAAGCGTAACACCACCATTCC 52106480 Query 552383 TTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCA-AACTGCTGTTACAATTC 552441 ||| || | | || | || || ||||| || || | | || || | | | Sbjct 52106479 CACCAAACAAACGCAGACCTTCACCACCTACTCAGACAACCAGAGCAGC-GTCCTAGTCC 52106421 Query 552442 AAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATT 552501 | | | |||||| || || | || || || || ||| || || | ||| | Sbjct 52106420 AGGTGTATGAAGGTGAGAGGGCTATGACAAAGGACAACAATTTGCTGGGCAAGTTTGACC 52106361 Query 552502 TAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCG 552561 || ||| || || ||||| || |||||||| || || ||||| || |||||||| || | Sbjct 52106360 TAACAGGCATCCCCCCTGCACCCCGTGGAGTCCCTCAGATTGAGGTCACTTTCGACATAG 52106301 Query 552562 ATGCCAATGGAATTTTGAATGTGACTGCT 552590 |||| ||||| || |||| || | |||| Sbjct 52106300 ATGCTAATGGTATCCTGAACGTCAGTGCT 52106272 >seq9159 Length=6432859 Score = 120 bits (132), Expect = 2e-21 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | |||||||| || |||||||||||||| || || || || || ||||||| Sbjct 3139242 ATGCTGTAGTCACTGTACCGGCCTATTTTAATGACTCTCAGCGCCAGGCCACAAAAGATG 3139301 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||| || || ||||| || || ||||||||||| || || |||||||| Sbjct 3139302 CTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAATGAGCCAACAGCTGCTGCTA 3139361 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| || ||||| Sbjct 3139362 TAGCCTATGGTCTGGATAA 3139380 Score = 104 bits (114), Expect = 2e-16 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| ||| | |||||||| ||| ||||||||||| | ||| |||| || Sbjct 3138264 AGCTGTTGGTATCGATCTCGGAACCACCTATTCCTGTGTTGGTGTGTTCCAACATGGGAA 3138323 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| ||||||||||| || |||||||| || || ||| || ||| ||||||| Sbjct 3138324 GGTGGAAATCATTGCCAATGACCAGGGTAACAGGACCACACCAAGCTACGTTGCTTTCAC 3138383 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACC 550168 || || || || |||| ||||| || || | |||| || || ||||| ||| Sbjct 3138384 AGATACAGAGAGGTTGATTGGCGATGCTGCCAAGAACCAAGTTGCAATG--AATCCCACC 3138441 Query 550169 AATACTATTTTTG 550181 || || | |||| Sbjct 3138442 AACACAGTCTTTG 3138454 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||| | || ||||| || |||||||| || || ||||| |||||| Sbjct 3140928 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 3140987 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || |||||||| ||||| ||||| Sbjct 3140988 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 3141019 >seq210791 Length=250 Score = 104 bits (114), Expect = 2e-16 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||||||||| || || || |||||||| ||||| ||||| | || || ||||| || Sbjct 133 GTTACGGATGCGGTTATCACGGTACCAGCCTATTTCAATGATGCTCAGCGCCAAGCAACC 74 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 ||||| ||||| || ||||| || | ||||| || || || || ||||| ||||| ||| Sbjct 73 AAAGACGCTGGCCGCATTGCGGGGTTGAATGTGCTGCGCATCATTAATGAGCCTACGGCT 14 Query 550511 GCTGC 550515 ||||| Sbjct 13 GCTGC 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4017064553220140