Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq23847 358 2e-94 seq20500 145 2e-30 >seq23847 Length=8263 Score = 358 bits (396), Expect = 2e-94 Identities = 806/1194 (68%), Gaps = 38/1194 (3%) Strand=Plus/Minus Query 25957 ACGTTCTTCTAAGCCGTAGGTCGTAGGTTCGAATCCTACAGGGCGTGCCATTTAAAAACA 26016 || ||||||||||||||||||| ||||||||||||||| ||||||||||||| | | || Sbjct 7501 ACTTTCTTCTAAGCCGTAGGTCATAGGTTCGAATCCTATAGGGCGTGCCATTAATTATCA 7442 Query 26017 GTCGCTTACGC-CAGTTTCAAGCCA--GCCTGATTTTCTCCTTGTGTCGTATTTGTGTCA 26073 | |||||| || | || ||| || ||||||| ||| | ||| ||| || Sbjct 7441 ATGAGTTACGCTCATTCTC---CCACTGCAAGATTTTCCAAAAGTGCCAGATTAGTGACA 7385 Query 26074 TGGTT-GCCAAAAATGGCATCAATTTTCCGTGCGTGTTCGCTTAAGTGGTTCGGTGCCAG 26132 | | ||||| | | | |||||||| | || |||||| ||| ||| | || | || Sbjct 7384 TTGCCCGCCAAGACTT-CGTCAATTTTTCTCGCATGTTCGGTTAGATGGGTTGGGGATAG 7326 Query 26133 GTGAGCGTATCGACGTACCATTTCGATGGACTCCCAGCCGCCCATTTCTTGCAGAACTGA 26192 |||||| || || | |||||||| ||| |||||| ||||||||||||||||| | || Sbjct 7325 GTGAGCATAGCGCTGAACCATTTCTATGCTCTCCCATCCGCCCATTTCTTGCAGTGCCGA 7266 Query 26193 CAACGGAACGCCGGACTGAATTAACCAGCTCGCCCAGGTATGCCGGAGGTCATGAAAACG 26252 | || ||||| | ||||| ||||| |||||||| |||||||| || || ||||| || Sbjct 7265 AAGTGGCACGCCTGCCTGAACCAACCAACTCGCCCACGTATGCCGCAGATCGTGAAAGCG 7206 Query 26253 GAAGTCTTCTATACCCGCTCTTTCCAGT--CCAATGCGCCAGGCGACATTGTCATCCACT 26310 ||| || ||| ||||| || || | || || ||| || || ||||| || Sbjct 7205 GAAATCAGTTATTCCCGCCCT--CCGTTTCCCGGTGTTCCAAGCTGAGTTATCATCAACC 7148 Query 26311 CGCATTTTGCGGACAGCCGGAGTGACGGTTTTATCCGGGCG--CGTTGATG-GCT-TCGT 26366 |||||||| | || |||| || || | ||| | |||| | ||| |||| Sbjct 7147 CGCATTTTCCTAACTGCCGCGGTCAC----TCCGCCGCCAGGTCGTTTCCGTGCTGTCGT 7092 Query 26367 GTGAACGAATACCCACCTGGAACTTTTCCCGATCTGATCCCTTAACACCCTGCATGCGGT 26426 || || || || ||| || ||||| |||||||| | || | ||| ||||| Sbjct 7091 ATGCACAAAGACGTACCGTGAGTGCTTCCCAATCTGATCACGCAATGTTCGGCACGCGGT 7032 Query 26427 ATCATTCAGAGCCACGCCGATAGCCTTGCCCGCCTTCGCGTTCTCCGGATTTACCCATGC 26486 ||| |||||||| ||||| |||||||| ||||| || |||||||| || | | |||||| Sbjct 7031 ATCGTTCAGAGCAACGCCAATAGCCTTACCCGCTTTGGCGTTCTCTGGGTGGATCCATGC 6972 Query 26487 AACCTTTCTCTGCATATCGACCTGCTGCCACTCCAGATCAATGATGTTGGAGCGGCGCAG 26546 |||||||| ||||| || |||||| |||||| ||||| ||||| || || ||||| || Sbjct 6971 CACCTTTCTTTGCATGTCAACCTGCGACCACTCGAGATCGATGATATTTGAACGGCGTAG 6912 Query 26547 GCCGGTTGCCAGTGCAAATATCACCACCGGCTTTATCGACTCCGGCATGCAGGAGAT-AA 26605 ||| |||||||| ||||| | || || ||| | | | ||||||||||| ||| || Sbjct 6911 GCCAGTTGCCAGGGCAAAAACGACAACGGGCCTAAACTGTTCCGGCATGCATTTGATCAA 6852 Query 26606 GCCGTTCTGCCTCGTCCCTGGTCAGCCATCGGATGCGTTTGCTGATCGGCTTTTTCGTTT 26665 | || ||||| ||| | |||||||| | || ||| ||||| || || | || Sbjct 6851 TGTGGTC-GCCTCTTCCTTTGTCAGCCACCTGACGCGCTTGCTTGCAGGTTTCCTTACTT 6793 Query 26666 TTATAACCGGGGCCGTTTTAATCCAGCCCCAGTCATTAGCCGCAGCCTTGAACAGAGATC 26725 | || ||||| || || | ||| ||| || | ||||| ||| | ||| | Sbjct 6792 TAATCACCGGCGCTTTTCGCAGCCACTTCCATTCGTCGGCCGCTATCTTCATCAGCCCCC 6733 Query 26726 GCATGAAAGAAAGGTGCTGACTCTTTGTGGCCTGGCT--TACCGGTTTCTCAACATACGG 26783 ||||||||| |||||||| || || ||| ||| ||| ||||| | || | Sbjct 6732 TCATGAAAGAGAGGTGCTGGCTTCGAGTAGCC--GCTGATACTGGTTTAGGCTCGTATGC 6675 Query 26784 AGG---CGGTT---CCTTCCCCCGGCGTATAGCCGCGTCCCTGCGCGACTCCCAGACCTG 26837 ||| ||||| |||||| | ||| || || | | ||||| || Sbjct 6674 AGGCACCGGTTTACCCTTCCTC------TCAGCTGCTGCCTTTTTCAGTTCCCATCGTTG 6621 Query 26838 AATATGCTTACGGTTGACCATCTTCGAAACAGCCTCATGAACCTGATCAGCTGTGATGGT 26897 |||||| | ||| ||| || | ||||| | || | |||| | ||||||| Sbjct 6620 GCGATGCTTCCTGTTAGGCATTTTGGCTACAGCAGCCATAATCCGATCTTCCGTGATGGA 6561 Query 26898 TGAAATATCCCGGCCGGAGAAATGCCGCAGGAAATATTCGATTTTGGTCTTATCGTCATC 26957 ||| | ||||| ||| ||| | |||||| | || || || || ||||| || Sbjct 6560 TGAGAGGGTTTTGCCGGCGAAGTGCTGAAGGAAAAACTCTATCTTCGTTCGGTCGTCGTC 6501 Query 26958 GAGTGACCGCTTATGCTCCTTCTCACGGAGCCACCTGATGCAACATTCCTCAAACGTCCT 27017 | ||||| || | |||||||| ||||| | | || || ||||| || Sbjct 6500 CAATGACCTTTTCTCTTCCTTCTCCGTTAGCCAGCGCAGACACGCCTCTTCAAAAGTGTG 6441 Query 27018 CGTCGGTAGTTCCCCAATTTTATCCACCCGCCACGCTTCAGCCTTCAGCTTGTCGTGCAG 27077 | || || ||||| | || | |||||||| || |||||| | |||| |||| || Sbjct 6440 CTCCGCTATCTCCCCGAGCTTGTTTACCCGCCAAGCCTCAGCCCTTAGCTGATCGTAGAG 6381 Query 27078 CTCCTGCGCTTGTTTCTTGTCCCCCGTACCAAGAGATCGTCTAATTCTTTTCCC 27131 || |||||||| ||||||| ||| ||| | |||||||||||||| || Sbjct 6380 TTCTTGCGCTTGGAGCTTGTCCGTCGTGTTAAGGCAGCGTCTAATTCTTTTACC 6327 Score = 352 bits (390), Expect = 9e-93 Identities = 431/583 (74%), Gaps = 10/583 (2%) Strand=Plus/Minus Query 29216 GGGCACTGGTTGCCCCAATGATCCCACCCCGGCGCACCGCAACGACTGAACAACTCGATG 29275 ||||| || || |||||||||||||| || |||||| ||| ||| ||||| | ||||| Sbjct 5788 GGGCATTGATTCCCCCAATGATCCCAGCCTGGCGCATCGCCACGGCTGAATAGTTCGATT 5729 Query 29276 CGCGGTACGTCGCCGTAGAGCAACTCAAGACGGTGGCGAACCTCCCACGGCTTTTCACTG 29335 || | ||||||||||| |||| |||||| || |||| || ||||| || || | ||| Sbjct 5728 CGTGACACGTCGCCGTAAAGCAGCTCAAGGCGCCGGCGGACTTCCCAGGGTTTCGCGCTG 5669 Query 29336 TGGGCACCGAGCGGGCTGTAAACCACCTGCTTAATCCCGGCGTGCTGTCGC--TCAAGCC 29393 || | ||||| |||| | || |||||||| | | | | |||| ||| || | | Sbjct 5668 TGCTCGCCGAGGCAGCTGAACACAACCTGCTTTA--CTGATGCGCTGGCGCGCTCGATGC 5611 Query 29394 CAGCGCCGCGGGTGGCAATCAGCAGGTCTTCGGTATTTGCACGGGTGTGGTTGCCGCCGT 29453 | |||||| ||| |||| || |||||||| || || || |||| |||||||| | Sbjct 5610 CTTGGCCGCGAACGGCGATCAACACGTCTTCGGAGTTGGCGCGCGTGTAATTGCCGCCAT 5551 Query 29454 TCATGCGCGTCTCGGCGTTAAGCAGGTCGAGGAAGTCGTAAAAGTCGGTGATTTCACCCT 29513 |||| || || || ||||| |||| |||||| | |||| |||||| |||| || Sbjct 5550 TCATCCGGGTTTCTGCGTTGAGCATGTCGAGTAGGTCGGTGAAGTCGAAGATTGTTTGCT 5491 Query 29514 CGGCCAGCGCCTTGTTGATGCGCATCTCGGCGTTCTGATTAAGCTTCACCCAGGTAAAGC 29573 |||||||||||||| ||||| ||||| | ||| || || ||||||||||| || Sbjct 5490 GCAGCAGCGCCTTGTTGAAGCGCAGTTCGGCCTGCTGGTTCAGTTTCACCCAGGTGAACG 5431 Query 29574 CCTTCATCGTGCGAACGGTAAAGCCCCAGGCCTCGGCAAGTTCGATAGCCTCCTGGTTAT 29633 | |||||||| | ||| |||| |||||||| || || || || || ||||||||| | | Sbjct 5430 CTTTCATCGTTCTGACGCTAAATCCCCAGGCTTCTGCCAGATCTATCGCCTCCTGGCTGT 5371 Query 29634 GCGTGCCGGTGTACCACATCGCCAGCACCGAGTTTTC-GGCG--GCAAGCTCCCACACCG 29690 | ||||||||||||||||||| ||||| | | || |||| |||| |||| |||| Sbjct 5370 GGTTGCCGGTGTACCACATCGCGAGCAC---GCTATCTGGCGCAGCAACAGCCCATACCG 5314 Query 29691 GCAGGCGCTTAATGTCGATTAGCTTCATGGTTGAGTAGTGATCGGCGGCAGCGCCGTTGC 29750 |||||||||| | ||| | | |||| || |||||||| | || ||||| |||| Sbjct 5313 GCAGGCGCTTCAGGTCTACCATGCTCATCGTGCTGTAGTGATTACCTGCGGCGCCATTGC 5254 Query 29751 TGATGGTGTTGCCGTAAGACCAGGGCGGATCAGCGTAGATAAG 29793 |||| |||||||||||| |||||||||||| || ||||| || Sbjct 5253 TGATTGTGTTGCCGTAACTCCAGGGCGGATCGGCATAGATGAG 5211 >seq20500 Length=13099 Score = 145 bits (160), Expect = 2e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 43425 CCTGAATCCGGTTATCACATCACCTTCATCATTCCCATGCCAAAAAGCTGGAGCCAGAAG 43484 ||||| ||| |||||| | || || | | ||||||||| | ||||||||| ||||| Sbjct 1565 CCTGAGAGCGGCTATCACGTGACGTTTGTTTTACCCATGCCAGATAGCTGGAGCAAGAAG 1624 Query 43485 AAGCGTGCGCAACTTAACGGCCAGGCTCATCAGCAGAAACCGGATAAAGACAACCTGGAA 43544 || || || | | ||| | | ||||||||||| ||||| || ||||| ||||| Sbjct 1625 AAACGCGCTGAGATGGCCGGGAAACCGCATCAGCAGAAGCCGGACAAGGACAATCTGGAG 1684 Query 43545 AAGGCGCTTCTCGATGCCATTTTCGACGACGACAGCCGCGTCTGGGATGGCCGGGTGACA 43604 ||||| | || |||||||||||||| |||||| ||||| |||||||||| || || ||| Sbjct 1685 AAGGCATTGCTGGATGCCATTTTCGAGGACGACTGCCGCATCTGGGATGGTCGAGTAACA 1744 Query 43605 AAACTTTGGGGAGAGAAGGGACAGATCATTATTGGGGA 43642 || ||||||| || || || || ||||| ||||| Sbjct 1745 AAGATTTGGGGCGAAGTAGGCCAAATAATTATAGGGGA 1782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158086217057016