Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_019932.1 Length=29564 Score E Sequences producing significant alignments: (Bits) Value seq140712 140 6e-29 seq201653 132 9e-27 seq139306 111 3e-20 seq193383 96.9 7e-16 seq210825 84.2 4e-12 >seq140712 Length=381 Score = 140 bits (154), Expect = 6e-29 Identities = 209/294 (71%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 12313 GAAGCGTTCACCTTTGGCGAGCCGACGCCGGTTATGGACAAGCGCGATATCCTGGATTAT 12372 || ||||| ||||| ||||| |||| ||| | |||| |||||| || ||||||||| Sbjct 316 GAGGCGTTTACCTTCGGCGACCCGATCCCGATGCTGGATCGGCGCGAAATACTGGATTAT 257 Query 12373 GCCGAGTGCATCGGTAACGGGCGCTGGTATGAGCCGCCGGTCAGCTTTCA-CGGGCTGGC 12431 |||||| || || ||||||||||||||||| || |||||| ||| ||||| Sbjct 256 CTGGAGTGCTGCGTCGTCGATCGCTGGTATGAGCCGCCAATCT-CTTTCAACGGCCTGGC 198 Query 12432 GAAAAGCCTGCGAGCGGCGGTGCATCACAGCTCGCCGATTTATGTGAAGCGAAACATACT 12491 ||| | | || ||||||||||||||||| || ||||| ||||||| ||||| | Sbjct 197 GAAGACGTTCCGCGCGGCGGTGCATCACAGTTCACCGATCACGATGAAGCGCAACATCTT 138 Query 12492 GGCGTCCACTTTTGTGCCGCACCCGATGATGAGCCAGCAGGAGTTCAGCAAGTTTGCGCT 12551 | | || || ||| |||| | || || ||||||| |||||| | ||||| Sbjct 137 AGTGAGCATGTTCAAGCCCCACCGGCTGCTGTCAAAGCAGGATTTCAGCCGCTATGCGCA 78 Query 12552 GGACTATCTGGTGTTCGGCAATGCCTTTGCCGAGCTGCGCCGTAACGGCCTCGG 12605 ||| | | ||||||||||||| |||| ||| ||| |||| ||||||| Sbjct 77 GGATTTTATGGTGTTCGGCAACAGCTTTATGGAGTCGCGTTATAACCGCCTCGG 24 >seq201653 Length=261 Score = 132 bits (146), Expect = 9e-27 Identities = 184/258 (71%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 11002 CGAGGCGCTGATTGACGCGCTGACCACCGGGCGCAACCAGATATTTTTGTCGGCCAGCAA 11061 ||| || ||||| ||||| ||| ||| ||||| || ||||| ||| | || ||| ||| Sbjct 1 CGAAGCCCTGATCGACGCCCTGGACACGGGGCGTAATCAGATGTTTGTTTCCGCCTCCAA 60 Query 11062 GGCGCAGGCGCACGTCTTTAAAAACTACATCATTGACTTTGCCCGCCAGGTGGACGTTGA 11121 ||||||||||||| || ||||||||||||| | |||||| | |||| || || || Sbjct 61 GGCGCAGGCGCACCAGTTCAAAAACTACATCACCGCCTTTGCGCAAGAGGTTGATGTGGA 120 Query 11122 CCTGAAGGGCGACCCGATTGTGCTGCCGAACGGTGCCCGCCTGATTTTTCTTGGCACCAA 11181 ||| || || | || | ||||| |||| || || |||||| |||||||| Sbjct 121 GCTGCGCGGGGAAACCATCATCCTGCCAAACGCGGCTGAATTGCATTTTCTCGGCACCAA 180 Query 11182 CGTGCGCACCGCGCAGAGCTACACCGGCAACCTGTATCTCGATGAATATTTCTGGATACC 11241 | |||||| ||| || | ||||| |||||||| || |||||||||||||| || Sbjct 181 CTCCAACACCGCACAGGGCCGGCCAGGCAATCTGTATCTGGACGAATATTTCTGGATCCC 240 Query 11242 GAAATTCCAGGAGCTGCG 11259 ||| || | ||||| Sbjct 241 CGGCTTCAAGAAACTGCG 258 >seq139306 Length=319 Score = 111 bits (122), Expect = 3e-20 Identities = 126/164 (77%), Gaps = 4/164 (2%) Strand=Plus/Plus Query 3461 ACGCCGTTGTTTGCGCCGAGCTGGTCAAGGTCACCG-TCACTGGCGTAGGCCACCATATT 3519 ||| ||||||| ||| | | ||| || ||||| | | ||| |||||||||||||||| Sbjct 105 ACGTCGTTGTTGGCGGCCAACTGATCGAGGTCGCTGCTCA-TGGCGTAGGCCACCATTAC 163 Query 3520 TGCCTGCGCCGCTTCATTCACGCGCTGGCGCAGAATGACCTCGCGGTAGGCGTTTTCCTG 3579 |||||||| || ||||| ||||||||||| | | ||||| ||||||||| ||| || Sbjct 164 GGCCTGCGCTGCCTCATTGACGCGCTGGCGTAACAACACCTCACGGTAGGCGGATTCTTG 223 Query 3580 TAACAGCTTCACAATCGGCTCAGACTC-CAGCGCCAGCGTGCGG 3622 | | || || |||||||| ||||| ||| ||||||||||| Sbjct 224 CAGGACTTTGACGATCGGCTCGGACTCATAGC-CCAGCGTGCGG 266 >seq193383 Length=211 Score = 96.9 bits (106), Expect = 7e-16 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 26819 CAGCACGTTGGTCAGCAGCACCGGCTCATTGAGCGGGAAGGCGGCCGCATCGGCATCGTC 26878 ||| |||| ||| | | ||| || || | |||||| || || ||||| ||||| Sbjct 206 CAGGACGTCGGTAATTAACACTGGGGTGTTTAACGGGAATGCTTTTGCGTCGGCGTCGTC 147 Query 26879 TGCGGTACAGACCATGCCGACAATGGCCGTGGATACGGTGGAAATGGTGCGCGTGCCGTC 26938 ||||||||||||| ||||| ||||| ||| || |||| |||||||| ||||| || Sbjct 146 ACCGGTACAGACCATACCGACGATGGCGGTGCTGACAGTGGTGATGGTGCGGGTGCCTTC 87 Query 26939 GTTGATTTCGACGACGCGGACACCGTGATGATAATC 26974 ||||||||| ||||| || ||||| ||||| || Sbjct 86 GTTGATTTCCTGCACGCGCACGCCGTGGTGATAGTC 51 >seq210825 Length=239 Score = 84.2 bits (92), Expect = 4e-12 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 22072 ATCAGCGGCCACGCCCGGCCCTCGTCGGCCATCGCTTTCAGCGTCAGCAGCGACACCGCA 22131 || |||| ||||||| ||| || |||||| | | || || |||||||| Sbjct 20 ATAAGCGACCACGCCTTGCCTGTTTCCGCCATCAGCTGGATCGCCATTAGCGACACTCGG 79 Query 22132 CCGCCGGTGATTTCCGGGCGCAGCTCGCCGCTCAGCGTGATTTTTTCATCGCCCGGCCCG 22191 |||||||| | |||||| || ||||||||| ||||| |||||||| ||||||| Sbjct 80 CCGCCGGTCAGTTCCGGCAATAGGACGCCGCTCAATGTGATCGTTTCATCGTCCGGCCCC 139 Query 22192 ATAAACTGTGCCGAG-GCACGCCGCCCGACGCGGCTGTTTGTCGG 22235 | |||||| || | | || |||||||||||||||||||||| Sbjct 140 AAAAACTG-GCTTTGCGGTCGAAGCCCGACGCGGCTGTTTGTCGG 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94223699883432