Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq9159 129 4e-24 seq8367 104 2e-16 seq3835 95.1 8e-14 seq3581 95.1 8e-14 >seq9159 Length=6432859 Score = 129 bits (142), Expect = 4e-24 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 |||||| |||| ||| | ||||| || || ||||||||||| ||||| || || || || Sbjct 3139235 GTAACTAATGCTGTAGTCACTGTACCGGCCTATTTTAATGACTCTCAGCGCCAGGCCACA 3139294 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| |||| |||||||| || ||||| | || ||||| ||||| |||||||| Sbjct 3139295 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAATGAGCCAACAGCT 3139354 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || | || |||||||| |||||||| Sbjct 3139355 GCTGCTATAGCCTATGGTCTGGATAAGAA 3139383 Score = 98.7 bits (108), Expect = 6e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 3140928 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 3140987 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || ||||| ||||| ||||| Sbjct 3140988 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 3141019 Score = 93.3 bits (102), Expect = 3e-13 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||| ||| | ||||| || || ||||| | ||| | ||| |||| || || | Sbjct 3138269 TTGGTATCGATCTCGGAACCACCTATTCCTGTGTTGGTGTGTTCCAACATGGGAAGGTGG 3138328 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||| |||||||||||||| ||||| || || |||||| || ||| |||| || || | Sbjct 3138329 AAATCATTGCCAATGACCAGGGTAACAGGACCACACCAAGCTACGTTGCTTTCACAGATA 3138388 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCC 474501 | || | ||||| |||||||| || | |||| |||| ||||| Sbjct 3138389 CAGAGAGGTTGATTGGCGATGCTGCCAAGAACCAAGTTGCAATGAATCC 3138437 >seq8367 Length=9740059 Score = 104 bits (114), Expect = 2e-16 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || ||||| |||||||| || || | || ||||| |||||||| ||||||||| Sbjct 8893372 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTG 8893313 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||| ||||| || ||| ||||||||| ||| || || | |||||||| || Sbjct 8893312 TCTTGGATCTTGGCCTTCACATTTTCAATAGTGTCACTGGGTTCAACCTCAAGGGTGATG 8893253 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || ||||| || || || || Sbjct 8893252 GTCTTGCCAGTAAGGGTCTTCACAAAGATCTG 8893221 >seq3835 Length=59006440 Score = 95.1 bits (104), Expect = 8e-14 Identities = 329/507 (65%), Gaps = 6/507 (1%) Strand=Plus/Minus Query 475670 GATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGA 475729 ||| | || ||||| ||| || |||| || ||||| ||||| || || || || | Sbjct 52106775 GATGCCAAGCTTGATAAAGGCCAGATCCAGGAGATTGTGCTTGTGGGGGGCTCCACTCGT 52106716 Query 475730 ATTCCAAAAATAAGAGAAATGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAG 475788 ||||| || || | | |||| || | | || ||||||||| || | || | || Sbjct 52106715 ATTCCTAAGATCCAAAAGTTGCTG-CAGGACTTCTTCAATGGTAAAGAGCTCAACAAGAG 52106657 Query 475789 TGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGG 475848 | ||||| |||||||||||||| ||||| |||||||| |||||||||| | ||| | Sbjct 52106656 CATCAATCCAGATGAAGCTGTTGCTTATGGTGCTGCTGTGCAAGCAGCTA--TCCTCATG 52106599 Query 475849 TCAATCAGACGAGAAACTAAATAATAT-TGTACTTGTT-GACGTAACTCCACTTTCATTA 475906 | || |||| | || || || | |||| || || || || || || | Sbjct 52106598 GGAGACAAGTCTGAAAATGTGCAAGATCTGCTCCTGTTGGATGTCACCCCCCTGTCCCTG 52106539 Query 475907 GGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCA 475966 || | || |||| ||| || | |||||| ||| || | | || || | || || Sbjct 52106538 GGCATCGAGACAGCTGGTGGAGTGATGACTGCTCTCATCAAGCGTAACACCACCATTCCC 52106479 Query 475967 TGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAA 476026 |||| || | | || |||| || || || || || | | || |||| Sbjct 52106478 ACCAAACAAACGCAGACCTTCACCACCTACTCAGACAACCAGAGCAGCGTCCTAGTCCAG 52106419 Query 476027 ATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTT 476086 | | ||||||||| || | || || || || || || || | ||| | || Sbjct 52106418 GTGTATGAAGGTGAGAGGGCTATGACAAAGGACAACAATTTGCTGGGCAAGTTTGACCTA 52106359 Query 476087 GAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGAT 476146 ||| || || ||||| ||| | ||||| ||||| ||||| || ||||| || || ||| Sbjct 52106358 ACAGGCATCCCCCCTGCACCCCGTGGAGTCCCTCAGATTGAGGTCACTTTCGACATAGAT 52106299 Query 476147 GCAAATGGTATTCTTAATGTTACTGCT 476173 || |||||||| || || || | |||| Sbjct 52106298 GCTAATGGTATCCTGAACGTCAGTGCT 52106272 >seq3581 Length=70658698 Score = 95.1 bits (104), Expect = 8e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| || |||||||||||||| ||| || | ||||| || ||| Sbjct 14303092 CCATCACGACCAGCTCTTCCAATTTCTTGATAATAGGATTCCATTTCCTTAGGGGCACCA 14303033 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || || | | ||||| |||||| ||||||||||||||||| | ||| || Sbjct 14303032 TAATGAATAACCATCCGGATATCTGCTTTATTGATACCCATTCCAAATGCCACTGTAGCC 14302973 Query 627889 AC 627890 || Sbjct 14302972 AC 14302971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3258258221260328