Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq30879 158 2e-33 seq2976 89.7 7e-13 >seq30879 Length=12587 Score = 158 bits (174), Expect = 2e-33 Identities = 503/779 (65%), Gaps = 31/779 (4%) Strand=Plus/Plus Query 47770 CGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTTCTTCTTGTTGAAGC 47829 ||||| || | || | || || ||||| ||||| || || | | || || || ||| Sbjct 10910 CGGACCGAGTGCTGTTCACCCGTAGCAATCACAAAGTCTTCCGCCTTGTCCTGCTGTAGC 10969 Query 47830 ATTAACCACATAGCCTCGACATAATCTCTGGCATGTCCCCAGTCACGAAGTGCATCAAGA 47889 || | |||| ||| ||||| || | || || |||||||| ||||| |||| | | Sbjct 10970 ATCAGCCACTGCATCTCAACATAGTCACGCGCGTGACCCCAGTCGCGAAGCGCATTCATA 11029 Query 47890 TTTCCTAGATATAAACAGTCTTGCTTACCTTCAGAGATTGCTTTT----AATGCTCTTGT 47945 ||||| ||||| | || |||||| || || ||| | | || | || Sbjct 11030 TTTCCAAGATAAAGGCATTCTTGCAGTCCA----AGCTTGATACGCGCCAGAGCACGCGT 11085 Query 47946 AATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATACC 48005 |||||| ||||| || || |||||||| || | ||||| |||||||| |||||||| || Sbjct 11086 AATCTTTCGAGTCACGAATGTTTCACCGCGAATCGGAGACTCATGATTGAAAAGAATTCC 11145 Query 48006 ACTACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACTATCCAGTACCCATAGAG 48065 | || || ||||| || || | ||| | ||||| |||||||| |||| | Sbjct 11146 GTTGCACGCGTACATGCCATAGGCTTCCCTGTAGTTGACCGTGATCCAGTAAGCATACAT 11205 Query 48066 TTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTC 48125 || || || |||| || ||||| || |||||||| || || ||| | || || | || Sbjct 11206 CTTAGCCACGGCATAGGGTGAACGCGGGTAGAAAGGCGTTGTTTCTTTTTGAGGTATTTC 11265 Query 48126 TTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCAT 48185 ||| ||| || || || || || ||||| ||||| | |||||| || Sbjct 11266 TTGAACCAGGCCGTAGAGCTCGGATGTCGATGCCTGATAAAATTTTGTTGTATCTTTCAA 11325 Query 48186 CTCAAGCAA-ACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAG 48244 | |||| ||| | ||| || || | || || || |||| ||||| | | | | Sbjct 11326 ACCC-GCAATACGAATTGCTTCCAGAATTCGAAGTGTACCTAATGCATCCGAATTGGCCG 11384 Query 48245 TATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCT 48304 |||| || ||| ||||| |||||| || ||||| || || |||||||||| | | Sbjct 11385 TATATTCCGGCTCTTCAAAAGAAACCGCCACGTGACTTTGAGCAGCAAGATTATAGACTT 11444 Query 48305 CATCTGGTTGAACCTGCTGAATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCAT 48364 |||| || | || | ||| | || | | | | | ||| || || || ||||||| Sbjct 11445 CATCGGGCTTGACTTCCTGCACCACACGAATGAGGCTGGAAGAATCCGTCAAATCTCCAT 11504 Query 48365 AATGCAA-----------------TTTTA-ATTGATC---ATAAATGTGATCAATTCTAT 48403 ||||||| | ||| | |||| || | || ||||| | | Sbjct 11505 AATGCAAGGTCAGGTCATAGCCCTTGTTATGTGGATCGTGGTACAGATGGTCAATACGGT 11564 Query 48404 GTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCATACCCCTTTTCAAGAA 48463 |||||| | |||||||| || || | ||||| || || || || | ||| | Sbjct 11565 CTGTATTGAACAAAGAAGCGCGTCGACGCACGCCATGGACTTCGTAATTTTTCTGAAGTA 11624 Query 48464 GAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGTGATTAAAGCAACTTTC 48522 ||| ||| || | |||| |||||||| || |||| ||||| || || |||| |||| Sbjct 11625 GAAATTCGGCCAGATATGCGCCATCTTGCCCAGTAACGCCAGTAATCAATGCAATTTTC 11683 >seq2976 Length=93210757 Score = 89.7 bits (98), Expect = 7e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 48075 ACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTT 48134 ||| ||||| || | ||| || ||||| |||||||| ||||||| | |||||||| || Sbjct 13325899 ACCGTAAGGCGATCTTGGGTAAAAAGGGGTGGTCTCCTTCTGTGGGATTTCTTGCACTTT 13325958 Query 48135 ACCATAAAGTTCACTGGTGGATGCTTGATAGA 48166 ||| |||||||||||||||| ||||| |||| Sbjct 13325959 TCCAAAAAGTTCACTGGTGGAGGCTTGGTAGA 13325990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 663570405777520