Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq8367 84.2 4e-11 seq2002 84.2 4e-11 >seq8367 Length=9740059 Score = 84.2 bits (92), Expect = 4e-11 Identities = 159/233 (68%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 192305 TAATA-CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363 ||||| |||||||| || || | || | || | || | ||||| ||| || || Sbjct 8893678 TAATAGCCACCTCTGAGGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAG 8893619 Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423 ||||| | || || | || |||| || || ||||||||||| | ||||| ||||| Sbjct 8893618 TCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCG 8893559 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || || |||||||| ||||| || || || ||||| || | || | Sbjct 8893558 GGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGC 8893499 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || ||||| ||||| || ||||| | ||||| | ||| |||||||| Sbjct 8893498 TCAACCTCAAGAGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCAT 8893446 >seq2002 Length=109662234 Score = 84.2 bits (92), Expect = 4e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 49866 TCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA 49925 || ||| |||||| | ||| |||||||| ||||| || || |||||||| ||||||||| Sbjct 93266393 TCGTTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTCAGCCAAAAAATTGATGCA 93266334 Query 49926 AAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTA 49971 ||| | ||||||||| || || || || |||||||||| || Sbjct 93266333 AAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCTACTA 93266288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981562639346100