Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_021534.1 Length=47552 Score E Sequences producing significant alignments: (Bits) Value seq27876 134 4e-27 seq25870 122 3e-23 seq28775 102 2e-17 >seq27876 Length=5349 Score = 134 bits (148), Expect = 4e-27 Identities = 226/327 (69%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 38026 CTCGTTTAGCCCTGGAACCTCCTGACCATCAAGTCCGTCGAACTGGTAAGGCTCAATGAT 38085 |||||| |||| |||| |||||| || || | ||||||| | | |||| |||| Sbjct 4502 CTCGTTCGGCCCAGGAAGCTCCTGTCCGTCGATGTCGTCGAAAGCGAACCCCTCATTGAT 4561 Query 38086 TTGCCCTATAACATCACCTGGATTGTAGATGACATGAGTGGCGCCGGGTAAAGACCCGAG 38145 || ||| || ||||| | ||||||| | | ||||| | | | || || Sbjct 4562 CAGCGGAATATTCTCGCCTGGCTGGTAGATGCGGTATGAAGCGCCAGCCAGCGCTCCCAG 4621 Query 38146 GTTTGTTTCTGCATATCTAACCGATGAAATGGTGTATTTCCCAAGGCCAAAATTCATGAA 38205 ||| | ||||| || || || || | | | || || || || || ||||| | Sbjct 4622 GTTCGATTCTGAGTACCTTACTGACGTGACGTCATACCGGCCGAGCCCGAAGTTCATCCA 4681 Query 38206 CTCTGTGACGTACTTCAAATCGTCAATGTATTCAAAAAGAGATTCCTGAATCAGGTCAGG 38265 ||||||||| | ||| | | || ||| || || || || ||||||||||||||||| Sbjct 4682 CTCTGTGACTTTCTTGATGTTGTTGTCGTACTCGAACAGCGACTCCTGAATCAGGTCAGG 4741 Query 38266 GAATGCCCTTATCTGACCGAAGTTGTCAGGTCTTGCCTCTCCATTTCGCGCAATATTGGT 38325 | | || | | ||| ||| |||||||||| ||||||| || ||||||||||| ||||| Sbjct 4742 GTACGCGCGCACCTGGCCGTAGTTGTCAGGCTTTGCCTCACCGTTTCGCGCAATGTTGGT 4801 Query 38326 TTGCGATTTCAGGCTGTTATTGGGTGA 38352 |||| |||||||||||| || || || Sbjct 4802 TTGCCCTTTCAGGCTGTTGTTCGGGGA 4828 Score = 80.6 bits (88), Expect = 8e-11 Identities = 109/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 36922 TTTTTGCTCATCTCTTGAGAAAGACAAGACGCCATCATCCCAAAATACAGTTACGCGAGC 36981 |||| | ||||| | | ||||||||| || || ||||||| || | || ||| || Sbjct 3398 TTTTCGTTCATCACGCGTGAAAGACAACACCCCGCCATCCCAGAACGCCGTCACGGTGGC 3457 Query 36982 GGCATCACAGATGGTCTGGATTCGCTCACCAATGGACTTATCCTCATCGTCAAAGGTGTA 37041 ||||||||||| ||||| || || || | || |||| ||||| || || ||||| Sbjct 3458 CGCATCACAGATCGTCTGAATCCGAGAGCCCAGCGAGATATCTTCATCATCGAATGTGTA 3517 Query 37042 ATCAAAGTACCCAAGACGCTCATCAGGCAGCG 37073 ||| || ||||| | |||| ||| |||| || Sbjct 3518 ATCGAAATACCCCATGCGCTGATCCGGCAACG 3549 >seq25870 Length=5211 Score = 122 bits (134), Expect = 3e-23 Identities = 327/493 (66%), Gaps = 8/493 (2%) Strand=Plus/Plus Query 42475 TTCCCCAAAGAATCTTGCAACGTTGTTCCCGGCTATCTCTAAGGACTGACTGATAGTAGA 42534 ||| || | |||| | | | |||||||||||| |||| |||| ||||| || || Sbjct 493 TTCACCGATGAATTTAGTGATGTTGTTCCCGGCGATCTGGAAGGCCTGACCCATGGTTTG 552 Query 42535 GGTTGTTTTGGCAAACTCCCTCCCAATACTGTCTCCCTGCGACAGGAGGCCATTGACTAT 42594 | | || ||| | ||||| | |||| || || || || | || || || | Sbjct 553 GATCGTGTTGCCGAACTCTTTGGCAATCACATCCCCTTGGCTAAGCAACCCTTTCACAAC 612 Query 42595 GACATCCGTTGTCAATTTGCCTTGGGCGGCCATATTTCTAAGCTCACC-GATGCCAACCC 42653 ||||| || || | ||||||| || ||||| | |||| ||| || | | | | Sbjct 613 AACATCGGTAGTTAGCTTGCCTTCTGCCGCCATGGCGCGGAGCTGACCTGACGTTA-CGC 671 Query 42654 CCAAAGAGTCGGCAAGAGCTATCA-TAAGCCGGTTGCCCTGCTCATTTACTGAGTTAAAC 42712 |||| ||||| || ||||| | | ||||| | | || | ||| | ||||| ||| Sbjct 672 CCAAGGAGTCAGCCAGAGCCACCGCTAAGCGCGAT-CCGTTCTCTGAGATAGAGTTGAAC 730 Query 42713 TCATCTCCGCGAAGGGCGCCAGACGCCATGCCTTGTGCGAGCTGGATAATTGCGTTG--C 42770 || || ||||| || |||| || || | |||| | |||||||| || | ||| | Sbjct 731 TCTTCACCGCGCAGAACGCCGGAGGCGAGCGCTTGAGAAAGCTGGATCATAG--TTGAAC 788 Query 42771 TTGCCTCTTCGGCTGACGCGCCGGATACAACAAAACCCTGATTGATTATTGTTGTCAGCC 42830 | || |||| | | ||| ||||| |||| || |||| ||| ||| | ||||||||| Sbjct 789 TGGCTTCTTGCGTGGTCGCACCGGAGACAATCAAGCCCTTATTTATTGTCGTTGTCAGCT 848 Query 42831 TTGTCAGGTCTTCCACGCTTACACCGTAGCTTCTGGTAGACCTCTCAAGTCTGGCGTACA 42890 ||| || ||||| ||||| || ||| | || | | |||||||| | | || | Sbjct 849 TTGCCAAATCTTCAGCGCTTGTTCCTGCGCTGCGCGTTGCACGCTCAAGTCGGCCATAAA 908 Query 42891 AGGTGGCCGTTGCGTCCAGTCCTGAGCGTGTTTTCTGCGCGATATCAAAAACACGATTAG 42950 | ||||||| |||| || || || |||| || | ||||||||||| || | | Sbjct 909 GCGCAGCCGTTGATTCCAACCCGGAACGCGTTTCTTGGGATATATCAAAAACCCGCTGCG 968 Query 42951 TTACATCGGCAAG 42963 |||||||||| || Sbjct 969 TTACATCGGCCAG 981 >seq28775 Length=3350 Score = 102 bits (112), Expect = 2e-17 Identities = 192/280 (69%), Gaps = 7/280 (3%) Strand=Plus/Minus Query 40158 TGATACCACTGCCACCGCCGGTAAGGTCTTTGTTGCTTATAACCTTTCCATTGTCGCCAG 40217 ||||||||| ||||||| | ||| |||||||| || ||||| || ||||| || | Sbjct 1979 TGATACCAC---CACCGCCTTGCATGTCCTTGTTGCTGATCACCTTGCCGTTGTCACCGG 1923 Query 40218 GTATCATGTACTGATTGCCATTGCTGGCCTGGAAGATTTCAGG--TAGGTTGTTCTCGCC 40275 | ||||||||||| || ||| |||| |||||| | || || || | ||| ||| || Sbjct 1922 GGATCATGTACTGCTTACCAGTGCTCGCCTGGTAAATCTCTGGCTTCCCTTG--CTCACC 1865 Query 40276 GACCTGATACATTGATCCAGCCTGCGCAGGGCCGCCATTCTTTAATGCCCCGGCAACAGA 40335 ||||| ||||| | ||||| |||||||||| || | || || || | || Sbjct 1864 TACCTGGTACATCGCGCCAGCGCTAACAGGGCCGCCGTTATAGCGCGCACCTGCCAAAGC 1805 Query 40336 CATTGCTTTAGCCACACCGACGGTGGAAACAATGCCAGCCTGTGCAGGTACTGCGTTAGC 40395 || | ||||| || ||||| || || || || || || |||||||||| Sbjct 1804 CAACCCACCAGCCAATCCCACGGTTGAGGTTATCCCTGCAGCCGCTGGAGCTGCGTTAGC 1745 Query 40396 GCCACCCGTAGCAAGTGATGTCATCGCTGCTGCTGGCGCC 40435 |||| || || || |||| ||| || || || |||||| Sbjct 1744 GCCAAGAGTTGCCAGGGATGCCATTGCGGCCGCCGGCGCC 1705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151627205725848