Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_021774.1 Length=29742 Score E Sequences producing significant alignments: (Bits) Value seq145387 138 2e-28 seq140712 125 1e-24 seq193866 109 1e-19 seq33731 89.7 1e-13 >seq145387 Length=359 Score = 138 bits (152), Expect = 2e-28 Identities = 238/346 (69%), Gaps = 0/346 (0%) Strand=Plus/Plus Query 4471 CATCATGGCCGGTTTTAACGGTACCACCCGCGCCGCCACCTCTGACCGCACCAAAAATCC 4530 ||||||| ||||| ||||| |||| ||||||| || || || |||| || Sbjct 1 CATCATGATCGGTTGGAACGGCACCAGCCGCGCCAGAACGTCGGATATCACCGTCAACAA 60 Query 4531 GATGCTGCAGGATGTTGCCGTCGGCTGGCTGCAGAAATACCGCAATGAAGCCCCGACGCG 4590 | || ||||||| ||| | |||||||| |||||||| |||||| | || || || Sbjct 61 GCTGTTGCAGGACGTTAACATCGGCTGGTTGCAGAAAGTCCGCAAGGGTGCGCCAGAGCA 120 Query 4591 TGTGATGAGCAATATCACCGATGCTGACGGTAAGGTCGTTTCGGCAGTGATTCGCGTCGG 4650 |||||| || | | | ||||| | || || |||| | |||||| |||| Sbjct 121 GGTGATGGATAAGGTGCTGGGCGAGGACGGCAGCGTTGTGTCGGAAAAAATTCGCATCGG 180 Query 4651 TCGAAACGGCGACTATGAGAACCTCGACGCGCTGGTGATGGATGCGACCAATAACCTGAT 4710 | || |||||| | ||||| || ||||||||||||||||| |||| | ||||| Sbjct 181 CACCGATGGTGACTATCACAACCTGGATGCGCTGGTGATGGATGCCGTCAATGAGCTGAT 240 Query 4711 TGACGAGGTTTATCAGGATGACCCGAAACTCGTTGCCATCGTTGGCCGTAAGCTGCTGGC 4770 | || |||||||||||| | |||| || ||| | ||||| ||| ||| |||| Sbjct 241 CGCCGCTTGGTATCAGGATGACACCGAACTGGTCGCCGTTGTTGGTCGTTCCCTGTTGGC 300 Query 4771 CGACAAATATTTCCCGCTGGTGAACAAGCCGCAGGAAAACAGCGAG 4816 |||||||||||||| || || ||| || ||| ||| | |||| Sbjct 301 GGACAAATATTTCCCACTCGTCAACCAGGAACAGCCAAATACCGAG 346 >seq140712 Length=381 Score = 125 bits (138), Expect = 1e-24 Identities = 204/288 (71%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 824 CTCAAGAAAGGCGTTACCGAATACCAGATAGTCGAGCGCAAAGCGGCTGAAATCCTGACG 883 ||| | |||| ||| ||||| |||| | | || ||||| |||||||||||||||| Sbjct 44 CTCCATAAAGCTGTTGCCGAACACCATAAAATCCTGCGCATAGCGGCTGAAATCCTGCTT 103 Query 884 GGACAGCAGTGGATGCGGAATGTAGGTGCTCGCGAGCACGTTGCG-TTTAACGTAAATCG 942 |||||||| | || || || | ||||| | | | |||||| || | ||| |||| Sbjct 104 TGACAGCAGCCGGTGGGGCTTGAACATGCTCACTAAGATGTTGCGCTTCATCGT-GATCG 162 Query 943 GTGAGCTGTGATGCACTGCAGAGCGCAGGCTTTTTGCCAGCCCGGAGAAGCTGACCGGCG 1002 |||| ||||||||||| || | ||| | | || ||||| ||| ||| || |||| Sbjct 163 GTGAACTGTGATGCACCGCCGCGCGGAACGTCTTCGCCAGGCCGTTGAAAGAGATTGGCG 222 Query 1003 GCTCGTACCA---TTTGCCGTTACTGATGCACTCGACGTAATCCAGAATATCGCGCTTAT 1059 |||| ||||| | | || || | |||||| | |||||||| || |||||| || Sbjct 223 GCTCATACCAGCGATCGACG--AC-GCAGCACTCCAGATAATCCAGTATTTCGCGCCGAT 279 Query 1060 CGAGCACCGGCACCGGCTCACCGAAGGTGAATGCCTCCATTTTTTGCG 1107 | |||| ||| | ||| || |||||||| || ||||| | | ||||| Sbjct 280 CCAGCATCGGGATCGGGTCGCCGAAGGTAAACGCCTCGACGTGTTGCG 327 >seq193866 Length=203 Score = 109 bits (120), Expect = 1e-19 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 1789 GCAGCGCTGCAGCTCCTCGAACGGGAATACCGATGCCTTATCGTCGACAAACTCGCACAT 1848 ||||||||||| || | | |||||| || || | ||||||||| || | |||||| Sbjct 203 GCAGCGCTGCATTTCGCCCATCGGGAAGACGGACGATGTATCGTCGATGAAGTTGCACAT 144 Query 1849 AAACAGGTTCTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAG 1908 |||||||| | ||| || ||||| |||||||| || |||| ||||||||| ||||| Sbjct 143 GAACAGGTTGTCAAAATCTTCATCGCTGTTTTCCTCTCGCAGCTCGTCGAGGTCAAACAG 84 Query 1909 GGTGCAGCCACCG-GCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAG 1967 | |||||| ||| |||| || || ||||| |||| ||||| || | || ||| Sbjct 83 GTCGCAGCCGCCGCGCAA-CGCATCTTCAATGTTGACGATCTGGCGGAATTGCTTGTCCT 25 Query 1968 CGCAAAGAAGCCCACCGGCGAG 1989 |||| || | || ||||| || Sbjct 24 CGCAGAGCACACCGCCGGCCAG 3 >seq33731 Length=845 Score = 89.7 bits (98), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 11608 GCCGAACTGGTTATTCCGCCGGAGGTGGGCGGCTTCTGGATGCGTGAGCTTGGCCTTTAC 11667 || ||| || | || |||||| || | |||||||||||| |||||||||| | |||||| Sbjct 310 GCTGAATTGATAATGCCGCCGCAGATCGGCGGCTTCTGGCTGCGTGAGCTGGCGCTTTAC 369 Query 11668 GACGATGAAG--GGACGCTGATTGCTGTTGCCAATATGGCCGAAAGCTACAAGCCAGAAC 11725 | |||||| | | | || || || || | ||| ||| | |||| |||||||||| | Sbjct 370 GCCGATGATGGCGAATGC--ATCGCCGTCGGCAACATGCCGGAAACCTACAAGCCATTGC 427 Query 11726 TGGCTGAGGGCTCAGGGCGT 11745 |||| || || || |||||| Sbjct 428 TGGCAGAAGGTTCGGGGCGT 447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94791735464928