Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_022749.1 Length=39758 Score E Sequences producing significant alignments: (Bits) Value seq55551 143 7e-30 seq23847 141 2e-29 >seq55551 Length=1332 Score = 143 bits (158), Expect = 7e-30 Identities = 289/427 (68%), Gaps = 4/427 (1%) Strand=Plus/Plus Query 18653 GAACCATGCCGACGCTTACTGTTATAAAACATTTCGATGTAATCAAAAATATCACCGCGA 18712 || ||||||||||| ||| || ||||| |||||||||| || | ||| | | Sbjct 119 GATCCATGCCGACGAACCGGGTTGTAGAACATCTCGATGTAATTGAATACGTCAGAGTGC 178 Query 18713 GCTTCTTCTCGCGTTCCGTAGATCTTTTTCTTTATCCGTTCACGTTTCAGTAGCTGGAAA 18772 ||||| || || || ||||||| ||| || || || |||||| ||| Sbjct 179 GCTTCGTCCCGGGTCGGGTAGATCCGCCGCTTGATTCGCTCCTTCTTCAGTGCACTGAAG 238 Query 18773 AAACTTTCTGCGACTGCGTTGTCATGACAGTTACCGCGACGGCTCATACTGCCCTCCAGC 18832 || || || || ||||| ||||| || ||||| || || |||||||| || | | Sbjct 239 AAGCTCTCAGCCACTGCATTGTCGTGGCAGTTGCCTCGCCGGCTCATGCTCGGAACTATG 298 Query 18833 CCGTGTGATTTCAGGAACGACTGCCACTCATAGCTTGTGTACTGACTGCCTTGATCAGAA 18892 |||||| ||||| | ||| |||| | || ||| |||| |||||||| || || Sbjct 299 CCGTGTTGCTTCAGTAGCGATAGCCAGTTGCTACTAGTGAACTGGCTGCCTTGGTCGGAG 358 Query 18893 TGAACCAGCA--CCTGCTTTTGAGGATTACGTCGCCACACGGCCATCAGAAGTGCATTCA 18950 |||| | || || || ||| || || ||| | || | ||||| | || Sbjct 359 TGAATGATCAAGCCCGCAGC--AGGCTTCCGCTTCCATATCGCTGATACGAGTGCCTGCA 416 Query 18951 GGACAATATCCTTTGTCATCCGGGGCTGCATTGACCAGCCAATAACTTTGCGCGAGAACA 19010 |||| |||| | |||||| ||| |||| ||| |||||||| || | || ||| | | Sbjct 417 ACACAAGATCCGTGGTCATCTGGGACTGCGTTGCCCAGCCAACCACCTGCCGTGAGTAGA 476 Query 19011 GGTCAACAACCACAGCCAGATACAGCCAGCCTTCGTGAGTCCGGATGTAGGTGATGTCCG 19070 |||| || | ||||| ||| ||||||||||||| | || ||||||||||| ||||| | Sbjct 477 GGTCGACGATCACAGTCAGGAACAGCCAGCCTTCATACGTGCGGATGTAGGTAATGTCGG 536 Query 19071 TTACCCA 19077 | ||||| Sbjct 537 TGACCCA 543 >seq23847 Length=8263 Score = 141 bits (156), Expect = 2e-29 Identities = 353/526 (67%), Gaps = 35/526 (7%) Strand=Plus/Minus Query 23327 GTCTATTTGCCGTGCGTGTTCGGTAAGGTGATTAGGTGCAAGGTGAGCATATCGACGAAC 23386 ||| |||| | || |||||||| || || | || | ||||||||||| || |||| Sbjct 7367 GTCAATTTTTCTCGCATGTTCGGTTAGATGGGTTGGGGATAGGTGAGCATAGCGCTGAAC 7308 Query 23387 CATTTCGATAGACTCCCAGCCTCCCATTTCCTGTAAAACTGACAACGGGACTCCGGCTTG 23446 |||||| || |||||| || |||||||| || | | || | || || || || || Sbjct 7307 CATTTCTATGCTCTCCCATCCGCCCATTTCTTGCAGTGCCGAAAGTGGCACGCCTGCCTG 7248 Query 23447 AACCAGCCAACTTGCCCAGGTGTGTCTCAAGTCGTGAAATCTGAAATCATCAATACCAGC 23506 ||||| |||||| ||||| || || | || |||||||| | ||||||| || || || Sbjct 7247 AACCAACCAACTCGCCCACGTATGCCGCAGATCGTGAAAGCGGAAATCAGTTATTCCCGC 7188 Query 23507 ---CCGTCTCAGCGCCGCT-TTCCAGGCTGTGTTTGCGTCATACCGCATCTTCCTTACTG 23562 |||| || ||| | ||||| |||| ||| | ||| |||||| ||||| || Sbjct 7187 CCTCCGTTTC----CCGGTGTTCCAAGCTGAGTTATCATCAACCCGCATTTTCCTAAC-- 7134 Query 23563 TTGGCGCTTTCGTTCCGTC------TGGTTT-GGTACAGCTTTCCTTGTACACAAATACC 23615 || ||| || |||| | | |||| || ||| | | | | |||||| | | Sbjct 7133 -TGCCGCGGTCACTCCGCCGCCAGGTCGTTTCCGT---GCTGT-CGTATGCACAAAGA-C 7080 Query 23616 CAACGGTGA-TGATTCCCGATTTGTTTTTTCAATACGCGACATGCAGTATCATTCAGCGC 23674 || |||| || ||||| || || | |||| || || || ||||| ||||| || Sbjct 7079 GTACCGTGAGTGCTTCCCAATCTGATCACGCAATGTTCGGCACGCGGTATCGTTCAGAGC 7020 Query 23675 AACGCCAA-----TTGCGCGGTTTGATTTACTCTCTTCCGGGTTTATCCATGCCACCCGG 23729 |||||||| || | || |||| | |||| |||| |||||||||||| Sbjct 7019 AACGCCAATAGCCTTACCCGCTTTGGCGTTCTCT-----GGGTGGATCCATGCCACCTTT 6965 Query 23730 CGCTGCATATCTATTTGTTGCCATTCAAGGTTGATGATGTTCGAGCGTCTTAAGCCTGTT 23789 | ||||| || | || ||| || || | |||||| || || || | || ||| ||| Sbjct 6964 CTTTGCATGTCAACCTGCGACCACTCGAGATCGATGATATTTGAACGGCGTAGGCCAGTT 6905 Query 23790 GCCAGTGCAAATTCAACAACAGACTTTAATGGCTCCGGACATTCAT 23835 ||||| ||||| | ||||| | | | || | ||||| ||| ||| Sbjct 6904 GCCAGGGCAAAAACGACAACGGGCCTAAACTGTTCCGG-CATGCAT 6860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 126754906163040