Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3835 154 1e-31 seq3581 105 5e-17 >seq3835 Length=59006440 Score = 154 bits (170), Expect = 1e-31 Identities = 937/1478 (63%), Gaps = 44/1478 (3%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||| | || || || |||||||| ||||| | || || ||||| ||||| |||||||| Sbjct 52106273 GCACTGACGTTCAGGATACCATTAGCATCTATGTCGAAAGTGACCTCAATCTGAGGGACT 52106332 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | | ||||| ||||| ||| | | ||| | ||||| ||| || || || Sbjct 52106333 CCACGGGGTGCAGGGGGGATGCCTGTTAGGTCAAACTTGCCCAGCAAATTGTTGTCCTTT 52106392 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGA-TAGTAA-CTACAGTTTGATTATCTGAAT 281603 || | | ||||| || | | |||| ||| | || | | || || ||||| | Sbjct 52106393 GTCATAGCCCTCTCACCTTCATACACCTGGACTAGGACGCTGC--TCTGGTTGTCTGAGT 52106450 Query 281604 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 52106451 AGGTGGTGAAGG-TCTGCGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAGCA 52106509 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||||||||||| || | || || || || || |||||||| | |||| Sbjct 52106510 GTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAACAGGAGC 52106569 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || ||| | |||||| | | || | || ||||||||||| | |||||||||| Sbjct 52106570 AGATCTTGCACATTTTCAGACTTGTCTCCCATGAGGATAGCTGCTTGCACAGCAGCACCA 52106629 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-T 281841 || |||||||||||||| ||||| | | | || || | |||||||||||| || | Sbjct 52106630 TAAGCAACAGCTTCATCTGGATTGATGCTCTTGTTGAGCTCTTTACCATTGAAGAAGTCC 52106689 Query 281842 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 || | || || | | |||||||||||||| || || || || | ||||| || || Sbjct 52106690 TGCAGCAACTT-TTGGATCTTAGGAATACGAGTGGAGCCCCCCACAAGCACAATCTCCTG 52106748 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAAG--ACC 281958 | ||| |||||| || || | ||| | | || || || || | |||| ||| Sbjct 52106749 GATCTGGCCTTTATCAAGCTTGGCATCACGCAGGGCCTTCTCCACTGGCTCCAAGGTACC 52106808 Query 281959 AGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TAT 282017 || ||| | || | | || || ||||| || | ||| || || | || Sbjct 52106809 -GCGGAAAAGA--TCAGCATTGAGCTCCTCGAAGCGGGCACGAGT--GATGGAGGTGTAG 52106863 Query 282018 AA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGT 282076 || ||||| || ||||| | || |||| ||||| | | ||| || ||||| || Sbjct 52106864 AAGTCAATGCCCTCGAAGAGGGAGTCAATCTCAATGCTGGCTTGCGTGGAAGAGCTCAGA 52106923 Query 282077 GCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--AT 282134 | ||| || || | ||||| ||||| | || | | | || | | | |||| | Sbjct 52106924 GTACGCTTCGCCCTCTCACAAGCTGTACGCAGCCGCCTCACTGC--TCGTTTATTGCCAG 52106981 Query 282135 TCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATT 282192 | || || | || | |||||| ||||| ||| | ||| | || | ||| || Sbjct 52106982 CGATGTCACGCTTGTGCTTGCGCTTGAACTCTTCTACAAA--ATGGTTCACCATACGGTT 52107039 Query 282193 ATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCC 282252 |||||||| || || |||| | || | || | || | | || | || | || Sbjct 52107040 GTCAAAATCCTCCCCACCCAGGTGGGTGTCCCCAGCTGTGGACTTCACCTCAAAGATGCC 52107099 Query 282253 ATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTAC 282312 ||| |||| | | | | |||||| || || || ||| ||||| || ||||| Sbjct 52107100 ATCCTCAATGGTAAGGATGGACACATCAAAAGTGCC-CCCTCCAAGTCAAAGATGAGTAC 52107158 Query 282313 ATTCATTTCTTTGTCTTGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 282367 |||| | ||| | || || || || | || || |||| |||||| || || Sbjct 52107159 ATTCTTCTCTCCAGCCCGGGTACCTTCTTGTCCAAGCCGTAGGCAATAGCAGCTGCTGTG 52107218 Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 || || || ||||| | || || || || |||| || | || |||||||| ||||| Sbjct 52107219 GGCTCGTTGATAATACGCATCACGTTGAGGCCAGTGATAGTGCCAGCATCTTTGGTGGCC 52107278 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTT 282486 || | || || || || || || || || || || ||||| ||| |||| ||| | ||| Sbjct 52107279 TGGCGCTGGGAGTCATTGAAGTAAGCGGGCACTGTGATAACAGCATTCTG-TACCTTTTT 52107337 Query 282487 TCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 282546 || | |||||| || | | ||||| || | | | ||| || || | || Sbjct 52107338 CCCCAGATAAGCCTCAGCAATCTCCTTCATCTTGGTCAGCACCATGGAGCTGATCTCCTC 52107397 Query 282547 TGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCA-----AAATATGGTTTATTA 282601 ||| ||| | | ||||| | | | |||| || | | || || Sbjct 52107398 TGG-GAA----GAAGGTCTTCATCTCGCCCTTGTACTCCACTTGCACCTTGGGCTTGCCG 52107452 Query 282602 CCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTA 282661 | | || | || || ||||| | ||||| || || || || | |||||| | Sbjct 52107453 CTCTCGTTCACCACACGGAAGGGCCAGTGCTTCATGTCCGACTGCACTGTGGGGTCATCA 52107512 Query 282662 AAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCT 282721 | | | || || | ||||| |||||||| || || ||||| || || | || || Sbjct 52107513 TACTTGCGGCCGATAAGACGTTTGGCATCAAAGATGGTGTTGGTGGGGTTCATCGCCACT 52107572 Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGA 282781 || | ||||| ||||| || || || | ||||| || || || | ||||| || Sbjct 52107573 TGGTTCTTGGCAGCATCCCCGATAAGGCGCTCTGTATCGGTGAAGGCCACATAGCTGGGC 52107632 Query 282782 GTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCT 282841 || ||||| || || || || || || || || || ||||| |||| || | ||||| Sbjct 52107633 GTGGTGCGGTTCCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGAAAGACACCC 52107692 Query 282842 ACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGC 282879 || ||| | | || || || | ||| || || || || Sbjct 52107693 ACGCAAGAATACGTGGTGCCCAGATCGATGCCGATGGC 52107730 >seq3581 Length=70658698 Score = 105 bits (116), Expect = 5e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| | |||||||| |||||||| |||||| | ||| | | | ||||| Sbjct 14302967 TGTTGTGGCTACAGTGGCATTTGGAATGGGTATCAATAAAGCAGATATCCGGATGGTTAT 14303026 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 14303027 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGAAGAGCTGGTCG 14303086 Query 131296 TGATGG 131301 |||||| Sbjct 14303087 TGATGG 14303092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3729275234814636