Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq142870 205 9e-48 seq8367 134 1e-26 seq7705 120 3e-22 seq1 104 2e-17 >seq142870 Length=314 Score = 205 bits (226), Expect = 9e-48 Identities = 221/293 (75%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 24803 TACTTTGTCGAGTGGGGTGTGTACCCGCGCCAGTTTCCCGTCGACAAGGTGCCCGCGCCC 24862 || || ||||||||||| || ||| |||| | || ||||||||||| | || |||| Sbjct 293 TATTTCGTCGAGTGGGGCGTTTACGGGCGCAATTTCACCGTCGACAAGATCCCGGCGCAA 234 Query 24863 AACCTCTCGCACTTGCTCTACGGCTTTGTGCCCATCTGCGGCGGCGCGGGCATCAACGAT 24922 ||||| | ||| |||| ||||||||| | || |||||||||||| ||||||||||| Sbjct 233 AACCTGACCCACCTGCTGTACGGCTTTATCCCGATCTGCGGCGGCAATGGCATCAACGAC 174 Query 24923 GCGCTAAAAACTGTGCCGGGCAGCTTCGAGGCGCTGCAACGATCGTGCGCCGGCCGCGCC 24982 || ||| | ||||| ||| |||| |||| || || || ||||||| Sbjct 173 AGCCTGAAAGAGATCGAAGGCAGTTTCCAGGCCTTGCAGCGCTCCTGTCAGGGCCGCGAG 114 Query 24983 GACTTCAAGGTGGCCATCCACGATCCGTGGGCGGCCATACAGAAACCGCAGAAAGGCGTG 25042 |||||||| || | ||||||||||||| || || | || ||| ||||||| |||||| Sbjct 113 GACTTCAAAGTCTCGATCCACGATCCGTTCGCCGCGCTGCAAAAAGCGCAGAAGGGCGTG 54 Query 25043 TCCGCGTGGAACGAGCCGTACAAGGGCAACTTTGGCCAGCTGATGGCGCTGAA 25095 |||| ||| | || || |||||||||||||| |||||||||||||||||||| Sbjct 53 ACCGCCTGGGATGACCCCTACAAGGGCAACTTCGGCCAGCTGATGGCGCTGAA 1 >seq8367 Length=9740059 Score = 134 bits (148), Expect = 1e-26 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || || ||| | ||| || ||||||||||| Sbjct 8893187 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 8893128 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||| |||||||| |||||||||||||| ||| || ||| Sbjct 8893127 AGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGGATTTTGGCCTT 8893068 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| ||||||| || |||| ||||| ||| ||||| ||||| || Sbjct 8893067 CACGTTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 8893008 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || || || ||||||||| || Sbjct 8893007 CTTCACAAAGATCTGCATGCCT 8892986 Score = 132 bits (146), Expect = 5e-26 Identities = 151/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 8892959 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGCTTGC 8892901 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| |||||| |||||||| |||||||||||||| ||| || || Sbjct 8892900 CAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGGATTTTGGCCT 8892841 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||| ||||||| || |||| ||||| ||| ||||| ||||| | Sbjct 8892840 TCACATTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGG 8892781 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 8892780 TCTTCACAAAGATCTGCATG 8892761 Score = 131 bits (144), Expect = 2e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| |||||||| || ||||| || || ||| | ||| || ||||||||||| Sbjct 8893643 GGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTGCTTGCC 8893584 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||| |||||||| |||||||| ||||| |||||| ||| Sbjct 8893583 AGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTTGGCCTT 8893524 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| ||||||| || || | |||| ||| ||||| || || || Sbjct 8893523 CACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGATGGTCTTGCCAGTAAGGGT 8893464 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 ||| || || ||||||||| || Sbjct 8893463 TTTCACAAAGATCTGCATGCCT 8893442 Score = 125 bits (138), Expect = 7e-24 Identities = 147/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| || || ||| ||| || ||||||||||| Sbjct 8893415 GGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCCAGCTGCTTGCC 8893356 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||| |||||||| |||||||||||||| |||||| ||| Sbjct 8893355 AGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTT 8893296 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | |||| ||||| |||| || || || | ||||| ||| ||||| || || || Sbjct 8893295 CACATTTTCAATAGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGTAAGGGT 8893236 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 8893235 CTTCACAAAGATCTGCATG 8893217 >seq7705 Length=13065498 Score = 120 bits (132), Expect = 3e-22 Identities = 146/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || || ||| | || || ||||||||||| Sbjct 4578389 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCATCTTCCAGCTGCTTGCC 4578330 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||| ||||| || ||||| |||||||| |||||| ||| Sbjct 4578329 AGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 4578270 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | || || |||| ||||| || | ||||| ||| ||||| |||| || Sbjct 4578269 GACATTCTCGATGGTATCACTGGGTTCCACCTCCAAGGTGATGGTCTTGCCAGTCAAGGT 4578210 Query 133643 TTTTACGAAAATCTGCATG 133661 || ||||| ||||||||| Sbjct 4578209 CTTCACGAAGATCTGCATG 4578191 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 |||||||| ||||| || ||||| || || ||| | || || ||||||||||| Sbjct 4578844 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCATCTTCCAGCTGCTTGCCA 4578785 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | || |||| |||||| ||||| || ||||| |||||||| |||||| ||| Sbjct 4578784 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTC 4578725 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | ||||| ||||| |||| || || || | |||| ||| ||||| |||| || Sbjct 4578724 ACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAACGTGATGGTCTTGCCAGTCAAGGTC 4578665 Query 133644 TTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 4578664 TTCACAAAGATCTGCAT 4578648 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||| ||||| || ||||| || || ||| | || || ||||||||||| Sbjct 4578617 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCATCTTCCAGCTGCTTGCC 4578558 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||| || || || ||||| |||||||| ||||| ||| Sbjct 4578557 AGCAAAGATCAGCCTTTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGAATCTTGGCCTT 4578498 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| | ||||| || || | |||| ||| || || |||| || Sbjct 4578497 GACATTCTCAATGGTGTCACTAGGCTCGACCTCCAGAGTGATGGTCTTACCCGTCAAGGT 4578438 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 4578437 CTTCACAAAGATCTGCAT 4578420 >seq1 Length=190651702 Score = 104 bits (114), Expect = 2e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925 ||||| || ||||| | ||||||||||||||||||||| |||| ||||| |||||| Sbjct 189193130 TACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 189193189 Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 || || |||||||| | ||| |||||||||||||| || |||||| || Sbjct 189193190 CTTTTCCTGTTGCAGGAGTCTTTGTACAGCATGTAAGGCGTGCCAGTCTC 189193239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482023194210640