Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq6870 127 2e-24 >seq6870 Length=19584067 Score = 127 bits (140), Expect = 2e-24 Identities = 240/347 (69%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 162640 CGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATAT 162699 || |||||||| |||||||| | ||| ||||||||||| || || | || || Sbjct 5963154 CGGACCATCTCCGCGTTGGTCTTGATGGGGAAGTCGGTGCCACACGTGTTGAGGACGTAG 5963213 Query 162700 TTCCACTTAACGCTGAGTCCGTA-CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCG 162758 ||| ||| | || | | ||| ||| | | ||||| || |||||||| | || Sbjct 5963214 CGCCAGGGCACGGGGC-TCTGCAGCAGGTCCCGCATGCAGTTGAGGTCGGCCTGCAGCCG 5963272 Query 162759 ACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACA 162818 ||| || |||||||| |||||||||| | |||| || ||||| ||| ||| || Sbjct 5963273 GGACCAGGAGGCGTACACCACGCTCTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCA 5963332 Query 162819 CGAAACTATCCCCATCACGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGT 162876 | | || || ||||||| | ||| | |||| | ||| || || ||||| Sbjct 5963333 GGCGGCGATGGCCCGCACGGCCTGCTGGAAGGCGGCGGGAGC-CTTGCCG-TCCACGTGG 5963390 Query 162877 ACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATC 162936 |||||||| | ||||| |||||||||| || | ||| | | |||||||||||| ||| Sbjct 5963391 ACGCAGTAGACGTTCTGCGGGGCGTAGAGAGCGCGCAGGAGCCGCTCGAACATCTCGATC 5963450 Query 162937 TTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || ||||| | || || || || || |||||||| || |||||||| Sbjct 5963451 TTGTGGTGGATGACCATGGAGTAGGCGATGGGGAAGTCGGCCTCCTC 5963497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576759709705600