Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq142870 140 3e-28 seq8367 96.9 3e-15 seq1 95.1 1e-14 >seq142870 Length=314 Score = 140 bits (154), Expect = 3e-28 Identities = 210/296 (71%), Gaps = 2/296 (1%) Strand=Plus/Minus Query 24830 CTTACTTCGTCGAGTGGGGCGTGTATCAGCGGCAGTTTTCCGTCGACAAAGTGCCCGCGC 24889 |||| ||||||||||||||||| || ||| | || |||||||||| | || |||| Sbjct 295 CTTATTTCGTCGAGTGGGGCGTTTACGGGCGCAATTTCACCGTCGACAAGATCCCGGCGC 236 Query 24890 CCAATTTGTCGCACTTGCTATACGCTTTCGTGCCGATATGCGGCGGCGAGGGCATAAACG 24949 || || | ||| |||| |||| || | ||||| ||||||||| | ||||| |||| Sbjct 235 AAAACCTGACCCACCTGCTGTACGGCTTTATCCCGATCTGCGGCGGCAATGGCATCAACG 176 Query 24950 ACGCTCTCAAAACAGTTC-CCGGTAGTTTTGAGGCGCTGCAGCGCTCGTGCGCCGGGCGC 25008 || || ||| || || || ||||| |||| |||||||||| || || ||| Sbjct 175 ACAGCCT-GAAAGAGATCGAAGGCAGTTTCCAGGCCTTGCAGCGCTCCTGTCAGGGCCGC 117 Query 25009 GACGATTTTAAGGTAACCATTCACGACCCCTGGGCCGCCATCCAGAAACCGCAGAAAGGC 25068 || || || || || | || ||||| || | ||||| | || ||| ||||||| ||| Sbjct 116 GAGGACTTCAAAGTCTCGATCCACGATCCGTTCGCCGCGCTGCAAAAAGCGCAGAAGGGC 57 Query 25069 GTCTCCACTTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTAATGGGCCTGAA 25124 || || | ||| | || || ||||| |||||||| || || | |||| ||||| Sbjct 56 GTGACCGCCTGGGATGACCCCTACAAGGGCAACTTCGGCCAGCTGATGGCGCTGAA 1 >seq8367 Length=9740059 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| || | | | ||||| || || ||||||||||| || ||| || Sbjct 8893208 CAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCG 8893149 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 | ||||| ||||| || || | | |||| || | ||| ||||| ||||| |||||||| Sbjct 8893148 CCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTC 8893089 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||||| |||| | ||| | || || | ||||| || |||| || Sbjct 8893088 CTTGTCTTGGATTTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGT 8893029 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 | || || |||||||| || || | || ||||||||| || Sbjct 8893028 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGCCT 8892986 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || ||||| |||| || | | | ||||| || || ||||||||||| || ||| || Sbjct 8892980 CAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCG 8892921 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| ||||| || || | |||| || | ||| ||||| ||||| |||||||| Sbjct 8892920 TCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTC 8892861 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || ||||| |||| | ||| | || || | ||||| || |||| || Sbjct 8892860 CTTGTCTTGGATTTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCGAGGGT 8892801 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || |||||||| || || | || ||||||||| Sbjct 8892800 GATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 8892761 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 || |||||| |||| || | | | |||||||| || ||||||||||| || ||| || Sbjct 8893436 CAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCG 8893377 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 ||||| ||||| || || | | |||| || | ||| ||||| ||||| |||||||| Sbjct 8893376 TCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTC 8893317 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || || |||| | ||| | ||| || | || || || || | || Sbjct 8893316 CTTGTCTTGGATCTTGGCCTTCACATTTTCAATAGTGTCACTGGGTTCAACCTCAAGGGT 8893257 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 | || || ||||| || || || | || ||||||||| Sbjct 8893256 GATGGTCTTGCCAGTAAGGGTCTTCACAAAGATCTGCATG 8893217 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 131908 GCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA 131967 ||||| |||| || | | | || ||||| || ||||||||||| || ||| ||| Sbjct 8893661 GCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCC 8893602 Query 131968 ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTT 132027 ||||| ||||| || || | | |||| || | ||| ||||| ||||| ||||||||||| Sbjct 8893601 GTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTT 8893542 Query 132028 ATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAG 132087 || || || |||| | || | || || | ||||| || || | || | Sbjct 8893541 GTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGAGTGAT 8893482 Query 132088 CGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || || ||||| || ||||| | || ||||||||| || Sbjct 8893481 GGTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCATGCCT 8893442 >seq1 Length=190651702 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| ||| || || | |||||| ||||||||||| ||| ||||| || ||||||||| Sbjct 189193130 TACTCCACTATCTCTGTGCACAGATTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 189193189 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTC 147614 ||||||| ||||| | ||||||| | |||||||| || ||| ||||| Sbjct 189193190 CTTTTCCTGTTGCAGGAGTCTTTGTACAGCATGTAAGGCGTGCCAGTCTC 189193239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475233281274960