Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_026601.1 Length=37238 Score E Sequences producing significant alignments: (Bits) Value seq38063 116 9e-22 seq201347 109 1e-19 seq145416 105 2e-18 seq142977 86.0 1e-12 seq139399 86.0 1e-12 >seq38063 Length=1017 Score = 116 bits (128), Expect = 9e-22 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15909 AACGAGCTGCGGCTGCGCGACAACAGCCCGGCCGGCGAAGCCTTGCAGCCCTTCGGCTGG 15968 ||||||||||| ||||||||||||||| | | || ||| | | ||| || |||||| Sbjct 766 AACGAGCTGCGCCTGCGCGACAACAGCGCCGATGGAGAATCGCTCTGGCCGTTTGGCTGG 825 Query 15969 ATCATTCACCGGCCGCGTGCGCGCTCCGGCTATGTGGCCCGCAGCGGCCTGTTCCGCGTG 16028 ||||| ||| || || ||||| |||||| | ||||||| || ||||| || || Sbjct 826 ATCATGCACACGCACCGCTCGCGCAGCGGCTACATCGCCCGCACGGGTCTGTTTCGGGTA 885 Query 16029 CTGGCCTGGCCGTACCTGTTCCGCCACTACGCCACCTCCGACCTGGCGGAAATGCTGGAA 16088 || |||||||||| || ||| ||| ||| ||||||||| || | ||||| Sbjct 886 CTCGCCTGGCCGTGGCTCTTCAAGAACTTTGCCGTGCGCGACCTGGCTGAGTTCCTGGAG 945 Query 16089 ATCTATGGCCTGCCGATCCGGCTGGGGAAATA 16120 ||||| || |||||| | || ||||| | ||| Sbjct 946 ATCTACGGGCTGCCGCTGCGTCTGGGCACATA 977 >seq201347 Length=207 Score = 109 bits (120), Expect = 1e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 7832 CGAGCAGTACGGCACCAAGCTTGGAGGCAAGAAAGGGAACGTCTCCCTCCTGAGCTTCGA 7891 ||||||||||||| ||||| | || ||| | || || |||||| ||| || ||| Sbjct 6 CGAGCAGTACGGCGCCAAGATCGGCGGCGACAAGGGCAACGTCAGCCTGTATTCCTACGA 65 Query 7892 TGGCCGCTACATGATCAAGAAAGCGATCCAGGAAACCATCCAGTTCGACGAGCGTATCCA 7951 |||||||| || |||| | || |||||| |||||||||||||| ||||| | || Sbjct 66 TGGCCGCTTCAAGATCCTGCGCGCCTGCCAGGACACCATCCAGTTCGATGAGCGCCTGCA 125 Query 7952 GGCCGCCCGCGAGCTGATCGAGGAATGCCTTCGCGACTGGACCCAGGGCGCCAGGCCCGA 8011 ||||||| | || ||||| || ||||| |||||||||| | ||| | | |||| Sbjct 126 GGCCGCCAAGGCCCTCATCGATGAGTGCCTGAACGACTGGACCGAAGGCTCACGCGCCGA 185 Query 8012 AGTGGTCACCCTGGT 8026 || ||||||||| Sbjct 186 GCTGCGCACCCTGGT 200 >seq145416 Length=624 Score = 105 bits (116), Expect = 2e-18 Identities = 335/515 (65%), Gaps = 17/515 (3%) Strand=Plus/Minus Query 21043 TGCGCGAGTGGATCGGTCAGCGTGTCATCAAGGACATGGCGGCCCAGGGCTACCAGATCA 21102 ||||||| ||||| || |||| |||||| | | || | ||| |||||| ||| Sbjct 614 TGCGCGAATGGATTGGCGAGCGGGTCATCCATGGGCTGCAGAGCCACGGCTACACCGTCA 555 Query 21103 CCAACAAGCTCTTCGAATCGACCGTGGGCGTAAAACGTACCGACATCGAGGACGACAACC 21162 ||||||| |||||| ||| |||| ||| || || | ||| || ||||||| | Sbjct 554 AAAACAAGCCCTTCGAGCTGACGGTGGCCGTTCCGCGCACGGCCATTGATGACGACACCT 495 Query 21163 TCGGCGTCTACGGACCGCTCATGCAGGAAATGGGGCGCGCTGCCGGCGCGCATCCCGACG 21222 || |||||| ||||| ||| || |||| ||| |||| | || | || |||| Sbjct 494 ATGGTGTCTACACCCCGCTGATGACCGAGCTGGGTCGCTCTGCTGCGGCCAACCCAGACG 435 Query 21223 AGCTGGTCTTCGCCCTGCTCAAGGCCGGCAACGCCAATCTCTGCTACGACGGTCAAAACT 21282 ||||||| |||| | | |||||||| ||| | || |||||| ||||| || || Sbjct 434 AGCTGGTGTTCGGCATCCTCAAGGCGGGCGATAGCACAGCCTGCTATGACGGCAAACCCT 375 Query 21283 TCTTCGACACCGATCACCCGGTCTATCCGAACGTGGATGGC-ACCGGCACGGCGACCACC 21341 |||| | |||| ||| |||| | | ||| | | ||| | | ||| |||| || Sbjct 374 TCTTTGCAGCCGACCACATGGTCAA---GGACGAGAAGGGCAAGCTGCA-GGCGCAGTCC 319 Query 21342 GTTAGCAACCTGTTCGCGCCGGCCGCTGATCCGGGGGCGGCCTGGTATCTGCTCGACACC 21401 | | |||| || |||| || || | | ||||| ||||||||||| Sbjct 318 AATGCCGACCT-----CGGCGGC----AAT---GGCGAGAAGTGGTACGTGCTCGACACC 271 Query 21402 AGCCGCAGCCTCAAGCCGTTGATCTACCAGGAGCGCATGAAGCCGTCGTTCACTTCGATG 21461 | || ||||||| |||||| |||||| |||| |||||| ||| | ||| Sbjct 270 ACTCGGGCGATCAAGCCTCTGATCTTCCAGGACCGCAAGAAGCCCAACTTCGTGGCCATG 211 Query 21462 ACCAAGGAAGACGACGAGCAGGTCTTCATGGCCGACGAGTACCGCTACGGCGTGCGCTCC 21521 || ||| ||| | ||||||| | ||||| |||||||| ||| Sbjct 210 ACGGCCGAAACGGACCCCAACGTCTTCACCAAGGCCGAGTTTGTGTACGGCGTCGATTCC 151 Query 21522 CGCTGCAATGTCGGATTCGGTTTCTGGCAACTGGC 21556 |||||||| || ||||| || |||||||| |||| Sbjct 150 CGCTGCAACGTGGGATTTGGCTTCTGGCAGATGGC 116 >seq142977 Length=495 Score = 86.0 bits (94), Expect = 1e-12 Identities = 202/301 (67%), Gaps = 7/301 (2%) Strand=Plus/Minus Query 15506 GCACCCGGCCAAAGGGCTGACGCCGGCCAAGCTGGCTCGCATCCTGGTCGAGGCCGAACA 15565 |||||| || || || ||||| |||||||||| | ||||||| || |||||| || Sbjct 454 GCACCCAACCCGGGGCCTCACGCCTTCCAAGCTGGCCCAGATCCTGGACGCGGCCGAGCA 395 Query 15566 GGGCAACCTCCAAGCCCAAGCCGAACTGTTCATGGACATGGAGGAACGCGACGCCCACCT 15625 || ||||| ||||| ||| |||||| ||||||||||||| |||| ||| | Sbjct 394 AGGAGACCTCACGGCCCAGTTCGACCTGTTCGAGGACATGGAGGAAAAGGACGGCCATAT 335 Query 15626 GTTCGCCGAAATGAGCAAGCGAAAGCGCGCAATCCTTGGCCTGGATTGGGCGGTCGAGCC 15685 | |||| ||| ||||||| ||||| ||| |||||| |||| | || ||| Sbjct 334 CGCCTCCGAGATGGGCAAGCGGCGCCGCGC---CCTGATCCTGGACTGGGAGATCACGCC 278 Query 15686 CCCGCGTAACGCCTCGGCGGCC-GAGAAAGC-CGATGCCGACTACCTGCACGAGCTGTTG 15743 || ||||| | || || | ||||| | ||||||| | || ||||||| || Sbjct 277 GCCCGAAAACGC--CAGCACCCTGGAAAAGCGCAATGCCGAGCAGTTGGGCGAGCTGGTG 220 Query 15744 CTCGACCTGGAAGGGCTGGAGGACTTGCTGCTCGATGCGCTGGACGGCATCGGCCACGGC 15803 | | | | | || ||||| || | |||| || ||||| ||||||| | ||| Sbjct 219 CAGGCCATACCGGACCTAGAGGATGTGATCTTCGACGCCACGGACGCCATCGGCAAAGGC 160 Query 15804 T 15804 | Sbjct 159 T 159 >seq139399 Length=451 Score = 86.0 bits (94), Expect = 1e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 21211 CGCATCCCGACGAGCTGGTCTTCGCCCTGCTCAAGGCCGGCAACGCCAATCTCTGCTACG 21270 |||| ||||||||||| |||||||| || || |||| ||| ||||| | |||| || Sbjct 3 CGCACCCCGACGAGCTCGTCTTCGCGCTCCTGCAGGCGGGCTTCGCCACGCGGTGCTTCG 62 Query 21271 ACGGTCAAAACTTCTTCGACACCGATCACCCGGTC 21305 |||| || ||||||||||||| |||||||| ||| Sbjct 63 ACGGCCAGTACTTCTTCGACACGGATCACCCTGTC 97 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118713054110400