Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2002 134 2e-26 seq2976 129 8e-25 seq1 93.3 6e-14 >seq2002 Length=109662234 Score = 134 bits (148), Expect = 2e-26 Identities = 104/124 (84%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | ||||||||||| |||||||||||||||| || | || | Sbjct 93266413 CCTCATCTCTACTGATGAGCTCGTTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 93266354 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| |||||||||||||| ||||| ||||||||||||| Sbjct 93266353 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 93266294 Query 39759 CAAC 39762 | || Sbjct 93266293 CTAC 93266290 Score = 93.3 bits (102), Expect = 6e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 |||||| |||||||| | || |||||||| || || ||||| || ||||| || ||||| Sbjct 93267687 TGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCC 93267628 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 ||||| || || || |||||||||||||| ||||| Sbjct 93267627 TTCCAGAGAGATGTTCTCCATGAAATCAAAAGGATT 93267592 >seq2976 Length=93210757 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || || || || | ||||||||| || || | ||| | Sbjct 73918721 CCTCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAATCCAGGCATCAGGCCCCTCTTCT 73918780 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| | Sbjct 73918781 TCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 73918840 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 73918841 CAACCACTCTCTCACC 73918856 >seq1 Length=190651702 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| ||||| || || || ||| ||| | || || || || || || | Sbjct 189187800 TCCACCCATAGAAGTGCATGCTGGTCAGCTTGCCATAGTTGGGTTCTGCGATGTGGATGT 189187859 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | ||||| || || ||||||||||||||||| ||||| ||||| || | | | | | Sbjct 189187860 TGAGAGATTGGCTCTGGTCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGACAGTTT 189187919 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | ||| ||||| | |||||| ||| ||| || | ||| | |||| Sbjct 189187920 TCTGGGAAATCTCCCACACTGTCTTATAAAGCTGCTTCAAGTCAGCAGGAA 189187970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 120/168 (71%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| |||| ||| || ||||| ||||| | || || | || || || ||||| | || Sbjct 189202235 CACTGAATACTTTCTTAGTTTCTTTGTGCAGGTTGGACACCGCAATCCTCGCTGCCAAAA 189202294 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||||||||| || | || || || || ||| | || ||||| | ||||| | Sbjct 189202295 TAGCATAGTCAGGGTGCTTGGTGGTCAGGGTTGCAGCTGTCTCAGCAGCCAGGGTATCCA 189202354 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 || | ||||| |||||| | || ||||| || || || ||||||| Sbjct 189202355 GCTCCACGGTTGTGACTCCGCTGTACAGCCCCTGGATCACCTTCATGG 189202402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 684922895141040