Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq30879 111 2e-19 seq9398 95.1 1e-14 seq4551 87.8 2e-12 >seq30879 Length=12587 Score = 111 bits (122), Expect = 2e-19 Identities = 342/523 (65%), Gaps = 7/523 (1%) Strand=Plus/Plus Query 158965 TCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCACATGGCC 159024 || || || |||||||||||||| || | | ||| || ||||| |||||| | Sbjct 10925 TCACCCGTAGCAATCACAAAGTCTTCCGCCTTGTCCTGCTGTAGCATCAGCCACTGCATC 10984 Query 159025 TCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAGCTCGATG 159084 || || || || ||||||||||||||||||| |||| ||| || || || | | | Sbjct 10985 TCAACATAGTCACGCGCGTGACCCCAGTCGCGAAGCGCATTCATATTTCCAAGATAAAGG 11044 Query 159085 ACTT-TTCCAGACTT---TTTCCACTCAGCCAGACCGAGCGTGATCTTGCGCGTCACAAA 159140 || || ||| | || || | |||||| | |||| ||||| || ||||| || Sbjct 11045 CATTCTTGCAGTCCAAGCTTGATACGC-GCCAGAGCACGCGTAATCTTTCGAGTCACGAA 11103 Query 159141 CTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCGAACAGGTT 159200 | | ||||| |||||||| || || ||||| ||| | || ||| ||| | Sbjct 11104 TGTTTCACCGCGAATCGGAGACTCATGATTGAAAAGAATTCCGTTGCACGCGTACATGCC 11163 Query 159201 ATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGGAGACGCCGTATGG 159260 ||||| || | ||| || || |||||||| || | | ||| | ||| | || || Sbjct 11164 ATAGGCTTCCCTGTAGTTGACCGTGATCCAGTAAGCATACATCTTAGCCACGGCATAGGG 11223 Query 159261 ACTCCGAGGATAAAATGGTGTCCCCTCATTTTGAATTGGTTCCTGAACCTTTCCAAACAT 159320 || || || || || || || |||||| | ||| |||||| || | | Sbjct 11224 TGAACGCGGGTAGAAAGGCGTTGTTTCTTTTTGAGGTATTTCTTGAACCAGGCCGTAGAG 11283 Query 159321 TTCACTCGTCCCAGCCTGATAAAATTTGAATTTAGAAA-CAAAATTGAATTGACGAATTG 159379 || ||| |||||||||||||| | || |||| | | | |||||||| Sbjct 11284 CTCGGATGTCGATGCCTGATAAAATTTTGTTGTATCTTTCAAACCCGCAAT-ACGAATTG 11342 Query 159380 CTTCAAGAATTCGAAGGGTACCCATGGCGTCGACGTTCGCCGTGTACTCGGGCTGCTCAA 159439 |||| ||||||||||| ||||| | || || || ||||| || || |||| |||| Sbjct 11343 CTTCCAGAATTCGAAGTGTACCTAATGCATCCGAATTGGCCGTATATTCCGGCTCTTCAA 11402 Query 159440 AAGAGAGCTTCACGTGTGACTGGGCTCCGAGGTTATAGACCTC 159482 |||| | | |||||| || || | || |||||||| || Sbjct 11403 AAGAAACCGCCACGTGACTTTGAGCAGCAAGATTATAGACTTC 11445 >seq9398 Length=4328165 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | ||| || | ||||| ||||| ||||| ||| |||||||| Sbjct 4304952 GTGAAGATGTATCGAGGGCTCGCAGAGTCCTTCCCACCATGCAGCCTCGTGCCAAACTGA 4305011 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCA 152140 || ||||| || |||||||||||||| |||||| || |||||||||| Sbjct 4305012 CCGATGGGCTGCAGCAGGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCCA 4305063 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| ||| |||| ||||| |||||| || | ||| || || || Sbjct 4304952 GTGAAGATGTATCGAGGGCTCGCAGAGTCCTTCCCACCATGCAGCCTCGTGCCAAACTGA 4305011 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTT 117420 || | |||| || ||||| |||||||| |||||||||||| ||||||| ||| Sbjct 4305012 CCGATGGGCTGCAGCAGGTTGAGGTTGTTACTGCCCACAAAGTTCTGAGCCAGGTT 4305067 >seq4551 Length=50680202 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||||||||| || |||| ||| ||||||||||| |||||| ||| | ||||| || || Sbjct 36615710 AGTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCAAACTG 36615769 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | || | | || || | |||||| || || ||||| |||||||||||||| Sbjct 36615770 ACCAATAGGTTGTAGAAGATTAACGTTGTTACTTCCAACGAAGTTCTGAGCCAAGTTGAC 36615829 Query 117424 AATCGT 117429 ||| || Sbjct 36615830 AATGGT 36615835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545633957502800