Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq8367 167 3e-36 seq7705 161 1e-34 seq1 102 9e-17 >seq8367 Length=9740059 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || ||||| |||||||| || ||||||||||||||| | || Sbjct 8893446 ATGCAGATCTTTGTGAAAACCCTTACTGGCAAGACCATCACTCTTGAGGTTGAGCCCAGT 8893505 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||| || || || ||||| || || |||||||| || ||| Sbjct 8893506 GACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 8893565 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || || | || ||||| | ||||| || Sbjct 8893566 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 8893625 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || |||||||| || || || || |||| || | ||||| Sbjct 8893626 ATCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGCCTCAGAGGTGG 8893672 Score = 163 bits (180), Expect = 3e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| ||||| |||||||| || || ||||||||||| | || Sbjct 8893218 ATGCAGATCTTTGTGAAGACCCTTACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 8893277 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| ||||||| || || || |||||||| || |||||||| || ||| Sbjct 8893278 GACACTATTGAAAATGTGAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCCGATCAG 8893337 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || || | || ||||| | ||||| || Sbjct 8893338 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGACGCACCCTGTCTGACTACAAC 8893397 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || ||||| || || || || ||||| || Sbjct 8893398 ATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCT 8893435 >seq7705 Length=13065498 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || |||||||| || || | |||||||| | || Sbjct 4578648 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACGTTGGAGGTTGAACCCAGT 4578707 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || ||||||| || || |||||||||||||| ||||| || || ||| Sbjct 4578708 GACACCATTGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAG 4578767 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || || || | ||||| || Sbjct 4578768 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCTGACTACAAC 4578827 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||||| ||| |||| || | ||||| Sbjct 4578828 ATCCAGAAGGAGTCCACTCTCCATCTTGTCCTGCGCCTGAGGGGTGG 4578874 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| | || || ||||| || ||||| ||||| ||| | || Sbjct 4578420 ATGCAGATCTTTGTGAAGACCTTGACGGGTAAGACCATCACTCTGGAGGTCGAGCCTAGT 4578479 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || ||||||||||||||||| ||||| || || ||| Sbjct 4578480 GACACCATTGAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCTGATCAG 4578539 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | || || |||||||| ||||| || || |||| || || || | ||||| || Sbjct 4578540 CAAAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCTGACTACAAC 4578599 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || || |||| || Sbjct 4578600 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCT 4578637 Score = 136 bits (150), Expect = 4e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || |||||||| || || | ||||| || | || Sbjct 4578192 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAACCCAGT 4578251 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | ||| | ||||| || || |||||||||||||| ||||| || || ||| Sbjct 4578252 GATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAG 4578311 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || || || | ||||| || Sbjct 4578312 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCTGACTACAAC 4578371 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || || |||| || Sbjct 4578372 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCT 4578409 >seq1 Length=190651702 Score = 102 bits (112), Expect = 9e-17 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 80575 GGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACAC--GACTCCA 80632 ||||| ||| | |||| |||||||| || | | || ||||||||||| | || | Sbjct 189190943 GGAGAGCCCTCATACGTTTCGTACGGCCCTTGCTGCTCAGCCAGCTCACAGCTGGCTTCC 189191002 Query 80633 TAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGT 80692 || ||| | | ||||||| |||||||| || ||||| | |||||| || Sbjct 189191003 --AGAGCCCCATAATAAATGGTCTCAAAGATCTGCTGGTTCAGGCGCTGCGCCTCGGGAC 189191060 Query 80693 CGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGA 80752 || || | || | ||||| ||||| |||||||||||||||| || || ||| ||| Sbjct 189191061 TTTCAAAGGGGAACCTCATCAGGATGAAGGCGTCAGCCAGGCCCTGCACACCAATGCCGA 189191120 Query 80753 TCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGG 80789 | ||||||||||| |||| || ||||| |||| ||| Sbjct 189191121 TGGGGCGGTGGCGTCTGTTGGAGCGCTCCGCCTGCGG 189191157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568661589860320