Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq145387 105 1e-18 seq140712 105 1e-18 seq201653 98.7 2e-16 seq193866 84.2 4e-12 >seq145387 Length=359 Score = 105 bits (116), Expect = 1e-18 Identities = 237/356 (67%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 11637 ATCATGGCCGGTTTTAACGGCGTGAAGCGTGCCGAAACCTCTGACCGCAGCAGCAATCCG 11696 |||||| ||||| |||||| | || ||| ||| || || || | ||| | Sbjct 2 ATCATGATCGGTTGGAACGGCACCAGCCGCGCCAGAACGTCGGATATCACCGTCAACAAG 61 Query 11697 ATGCTGCAGGATGTGGCGGTCGGCTGGCTGCAGAAATACCGCAATGAAGCCCCGGCGCGC 11756 || ||||||| || |||||||| |||||||| |||||| | || || | || Sbjct 62 CTGTTGCAGGACGTTAACATCGGCTGGTTGCAGAAAGTCCGCAAGGGTGCGCCAGAGCAG 121 Query 11757 GTGATGAGCAAGGTCACTGACGAGGAAGGCCGCACGACCTCTGAGGTTATCCGCGTGGGT 11816 |||||| ||||| | |||||| ||| || || || || ||| | || Sbjct 122 GTGATGGATAAGGTGCTGGGCGAGGACGGCAGCGTTGTGTCGGAAAAAATTCGCATCGGC 181 Query 11817 AAGGGCGGTGATTATGCCAGCCTCGATGCACTGGTGATGGATGCAACCAACAACCTGATT 11876 | | ||||| ||| || ||| ||||| |||||||||||||| ||| | ||||| Sbjct 182 ACCGATGGTGACTATCACAACCTGGATGCGCTGGTGATGGATGCCGTCAATGAGCTGATC 241 Query 11877 GAACCGTGGTATCAGGAAGACCCTGACCTTGTGGTGATTGTGGGACGTCAGCTACTGGCG 11936 | | ||||||||||| ||| | || || || | |||| || ||| || ||||| Sbjct 242 GCCGCTTGGTATCAGGATGACACCGAACTGGTCGCCGTTGTTGGTCGTTCCCTGTTGGCG 301 Query 11937 GACAAGTATTTCCCCATCGTTAACAAGGAGCAGGACAACAGCGAGATGCTGGCCGC 11992 ||||| |||||||| |||| ||| |||| ||| || | |||| ||||||| Sbjct 302 GACAAATATTTCCCACTCGTCAACCAGGAACAGCCAAATACCGAGTCTTTGGCCGC 357 >seq140712 Length=381 Score = 105 bits (116), Expect = 1e-18 Identities = 194/282 (69%), Gaps = 2/282 (1%) Strand=Plus/Plus Query 8003 TAACGCTTTTCCAGAAACGCATTACCGAACACCAGAAAATCCAGCACAAAGCGGCTGAAA 8062 |||||| |||| ||| || |||||||||| ||||||| || || ||||||||||| Sbjct 36 TAACGCGACTCCATAAAGCTGTTGCCGAACACCATAAAATCCTGCGCATAGCGGCTGAAA 95 Query 8063 TCCTGCTGGGAAAGCCACGGGTGCGGAATAAACGTTGAAGCCAGAATATTACGTTTGA-C 8121 ||||||| || ||| | |||| || | ||| | | | || || || || | | Sbjct 96 TCCTGCTTTGACAGCAGCCGGTGGGGCTTGAACATGCTCACTAAGATGTTGCGCTTCATC 155 Query 8122 GTAAATCGGTGAGCTGTGATGTACGGCAGCACGCAGGCTTTTTGCCAGACCGGTAAAGCT 8181 || |||||||| |||||||| || || || || | | || ||||| ||| | || Sbjct 156 GT-GATCGGTGAACTGTGATGCACCGCCGCGCGGAACGTCTTCGCCAGGCCGTTGAAAGA 214 Query 8182 GACCGGTGGCTCATACCATCTGCCGTTACTGATGCACTCGACGTAATCCAGAATGTCACG 8241 || || ||||||||||| | || | |||||| | |||||||| || || || Sbjct 215 GATTGGCGGCTCATACCAGCGATCGACGACGCAGCACTCCAGATAATCCAGTATTTCGCG 274 Query 8242 GCGGTCGAGTACCGGCACCGGTTCACCAAAGGTGAATGCCTC 8283 || || || | ||| | ||| || || ||||| || ||||| Sbjct 275 CCGATCCAGCATCGGGATCGGGTCGCCGAAGGTAAACGCCTC 316 >seq201653 Length=261 Score = 98.7 bits (108), Expect = 2e-16 Identities = 160/228 (70%), Gaps = 3/228 (1%) Strand=Plus/Minus Query 9349 GGTATCCAGAAAATCTCGTCGACGTACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGGAG 9408 || ||||||||| ||||| | ||||| | ||| ||| ||| |||||||||||| Sbjct 240 GGGATCCAGAAATATTCGTCCAGATACAGATTGCCTGGCCGGCCCTGTGCGGTGTTGGAG 181 Query 9409 TTGGTGCCGAGAAAAATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTC 9468 ||||||||||||||| || || || ||| ||| ||||| || | || ||| | Sbjct 180 TTGGTGCCGAGAAAATGCAATTCAGCCGCGT--TTG-GCAGGATGATGGTTTCCCCGCGC 124 Query 9469 AGGTCAACGTCAACCAGCCGGGCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGC 9528 || || || |||||| | ||||||||| ||||||| | |||| | ||||||| Sbjct 123 AGCTCCACATCAACCTCTTGCGCAAAGGCGGTGATGTAGTTTTTGAACTGGTGCGCCTGC 64 Query 9529 GTTTTACTGGCCGACAGAAAAATCTGGTTATGACCGGTTTTCAGGGCG 9576 | || ||| || | ||| ||||| ||| | || || | ||||||| Sbjct 63 GCCTTGGAGGCGGAAACAAACATCTGATTACGCCCCGTGTCCAGGGCG 16 >seq193866 Length=203 Score = 84.2 bits (92), Expect = 4e-12 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 8964 GCAGCGTTGCAGCTCCTCGAACGGGAACACCGACGCCTTGTCGTCAACAAATTCACACAT 9023 |||||| |||| || | | |||||| || |||| | ||||| | || | ||||| Sbjct 203 GCAGCGCTGCATTTCGCCCATCGGGAAGACGGACGATGTATCGTCGATGAAGTTGCACAT 144 Query 9024 GAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAAGCTGCTCAATGTCGAACAG 9083 ||||||||| | |||||| || |||||||||| | |||| || | ||| ||||| Sbjct 143 GAACAGGTTGTCAAAATCTTCATCGCTGTTTTCCTCTCGCAGCTCGTCGAGGTCAAACAG 84 Query 9084 CGTGCAGCCACCTTTCAGGGCGTCCTCAATGGTGACAATCTGCCGCCACTGACCGTCCGC 9143 |||||| || || || || |||||| |||| ||||| || | || |||| | Sbjct 83 GTCGCAGCCGCCGCGCAACGCATCTTCAATGTTGACGATCTGGCGGAATTGCTTGTCCTC 24 Query 9144 ACAGAGAAGCCCACCGGCAAG 9164 ||||| | || ||||| || Sbjct 23 GCAGAGCACACCGCCGGCCAG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93180173843268