Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq145387 132 9e-27 seq140712 131 3e-26 seq193866 109 1e-19 seq139306 102 2e-17 seq33731 86.0 1e-12 seq201653 84.2 4e-12 >seq145387 Length=359 Score = 132 bits (146), Expect = 9e-27 Identities = 237/346 (68%), Gaps = 0/346 (0%) Strand=Plus/Plus Query 4534 CATCATGGCCGGTTTTAACGGTACCACCCGCGCCGCCACCTCTGACCGCACCAAAAATCC 4593 ||||||| ||||| ||||| |||| ||||||| || || || |||| || Sbjct 1 CATCATGATCGGTTGGAACGGCACCAGCCGCGCCAGAACGTCGGATATCACCGTCAACAA 60 Query 4594 GATGCTGCAGGATGTGGCCGTCGGCTGGCTGCAGAAATACCGCAATGAAGCCCCGACGCG 4653 | || ||||||| || | |||||||| |||||||| |||||| | || || || Sbjct 61 GCTGTTGCAGGACGTTAACATCGGCTGGTTGCAGAAAGTCCGCAAGGGTGCGCCAGAGCA 120 Query 4654 TGTGATGAGCAATATCACCGATGCTGACGGTAAGGTCGTTTCGGCAGTGATTCGCGTCGG 4713 |||||| || | | | ||||| | || || |||| | |||||| |||| Sbjct 121 GGTGATGGATAAGGTGCTGGGCGAGGACGGCAGCGTTGTGTCGGAAAAAATTCGCATCGG 180 Query 4714 TCGAAACGGCGACTATGAGAACCTCGACGCGCTGGTGATGGATGCGACCAATAACCTGAT 4773 | || |||||| | ||||| || ||||||||||||||||| |||| | ||||| Sbjct 181 CACCGATGGTGACTATCACAACCTGGATGCGCTGGTGATGGATGCCGTCAATGAGCTGAT 240 Query 4774 TGACGAGGTTTATCAGGATGACCCGAAACTCGTTGCCATCGTTGGCCGTAAGCTGCTGGC 4833 | || |||||||||||| | |||| || ||| | ||||| ||| ||| |||| Sbjct 241 CGCCGCTTGGTATCAGGATGACACCGAACTGGTCGCCGTTGTTGGTCGTTCCCTGTTGGC 300 Query 4834 CGACAAATATTTCCCGCTGGTGAACAAGCCGCAGGAAAACAGCGAG 4879 |||||||||||||| || || ||| || ||| ||| | |||| Sbjct 301 GGACAAATATTTCCCACTCGTCAACCAGGAACAGCCAAATACCGAG 346 >seq140712 Length=381 Score = 131 bits (144), Expect = 3e-26 Identities = 205/288 (71%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 887 CTCAAGAAAGGCGTTACCGAATACCAGATAGTCGAGCGCAAAGCGGCTGAAATCCTGACG 946 ||| | |||| ||| ||||| |||| | | || ||||| |||||||||||||||| Sbjct 44 CTCCATAAAGCTGTTGCCGAACACCATAAAATCCTGCGCATAGCGGCTGAAATCCTGCTT 103 Query 947 GGACAGCAGCGGGTGCGGAATGTAGGTGCTCGCGAGCACGTTGCG-TTTAACGTAAATCG 1005 ||||||||| |||| || || | ||||| | | | |||||| || | ||| |||| Sbjct 104 TGACAGCAGCCGGTGGGGCTTGAACATGCTCACTAAGATGTTGCGCTTCATCGT-GATCG 162 Query 1006 GTGAGCTGTGATGCACTGCAGAGCGCAGGCTTTTTGCCAGCCCGGAGAAGCTGACCGGAG 1065 |||| ||||||||||| || | ||| | | || ||||| ||| ||| || || | Sbjct 163 GTGAACTGTGATGCACCGCCGCGCGGAACGTCTTCGCCAGGCCGTTGAAAGAGATTGGCG 222 Query 1066 GCTCGTACCA---TTTGCCGTTACTGATGCACTCGACGTAATCCAGAATATCGCGCTTAT 1122 |||| ||||| | | || || | |||||| | |||||||| || |||||| || Sbjct 223 GCTCATACCAGCGATCGACG--AC-GCAGCACTCCAGATAATCCAGTATTTCGCGCCGAT 279 Query 1123 CGAGCACCGGCACCGGCTCACCGAAGGTGAATGCCTCCATTTTTTGCG 1170 | |||| ||| | ||| || |||||||| || ||||| | | ||||| Sbjct 280 CCAGCATCGGGATCGGGTCGCCGAAGGTAAACGCCTCGACGTGTTGCG 327 >seq193866 Length=203 Score = 109 bits (120), Expect = 1e-19 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 1852 GCAGCGCTGCAGCTCCTCGAACGGGAATACCGATGCCTTATCGTCGACAAACTCGCACAT 1911 ||||||||||| || | | |||||| || || | ||||||||| || | |||||| Sbjct 203 GCAGCGCTGCATTTCGCCCATCGGGAAGACGGACGATGTATCGTCGATGAAGTTGCACAT 144 Query 1912 AAACAGGTTCTTAAAGTCCTCATCACTGTTTTCGCGTCTGAGCTGGTCGAGGTCGAACAG 1971 |||||||| | ||| || ||||| |||||||| || |||| ||||||||| ||||| Sbjct 143 GAACAGGTTGTCAAAATCTTCATCGCTGTTTTCCTCTCGCAGCTCGTCGAGGTCAAACAG 84 Query 1972 GGTGCAGCCACCG-GCAAGGGCGTCCTCAATAGTGACAATCTGCCGCCACTGTCCGTCAG 2030 | |||||| ||| |||| || || ||||| |||| ||||| || | || ||| Sbjct 83 GTCGCAGCCGCCGCGCAA-CGCATCTTCAATGTTGACGATCTGGCGGAATTGCTTGTCCT 25 Query 2031 CGCAAAGAAGCCCACCGGCGAG 2052 |||| || | || ||||| || Sbjct 24 CGCAGAGCACACCGCCGGCCAG 3 >seq139306 Length=319 Score = 102 bits (112), Expect = 2e-17 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 10103 CTCTATCCGGAAGACCAGCAGGAAGCCGTCGCCCGGACGCTCGCACTTGAGTCTGAGCCA 10162 || || ||||| || | | |||||| || ||| ||||| | |||||| ||||| Sbjct 298 CTGTACCCGGAGGAAGAACGGGAAGCAGTGCGCCGCACGCTGGGCTATGAGTCCGAGCCG 239 Query 10163 ATTGTTAAATTGCTGCAGGAAAACGCCTACCGTGAGGTTATCTGGCGTCAGCGTGTCAAT 10222 || || ||| | ||||| ||| ||||||||||||||| | | || ||||| |||||| Sbjct 238 ATCGTCAAAGTCCTGCAAGAATCCGCCTACCGTGAGGTGTTGTTACGCCAGCGCGTCAAT 179 Query 10223 GAAGCTGCACGCGCAGTGATGCTGGCTTATGCCATAGGCAGTGACCTCGAT 10273 || || || | || || ||| |||| || ||||| |||| ||||||||| Sbjct 178 GAGGCAGCGCAGGCCGTAATGGTGGCCTACGCCATGAGCAGCGACCTCGAT 128 >seq33731 Length=845 Score = 86.0 bits (94), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 11683 ATTCCGCCGGAGGTGGGCGGCTTCTGGATGCGTGAGCTTGGCCTTTACGACGATGAAG-- 11740 || |||||| || | |||||||||||| |||||||||| | ||||||| |||||| | Sbjct 322 ATGCCGCCGCAGATCGGCGGCTTCTGGCTGCGTGAGCTGGCGCTTTACGCCGATGATGGC 381 Query 11741 GGACGCTGATTGCTGTTGCCAATATGGCCGAAAGCTACAAGCCAGAACTGGCTGAGGGCT 11800 | | || || || || | ||| ||| | |||| |||||||||| ||||| || || | Sbjct 382 GAATGC--ATCGCCGTCGGCAACATGCCGGAAACCTACAAGCCATTGCTGGCAGAAGGTT 439 Query 11801 CAGGGCGT 11808 | |||||| Sbjct 440 CGGGGCGT 447 >seq201653 Length=261 Score = 84.2 bits (92), Expect = 4e-12 Identities = 162/237 (68%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 2218 GCGCAGCTTCTGAAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATG 2277 |||||| |||| || ||||||||||| ||| || | |||||| | ||| | Sbjct 259 GCGCAGTTTCTTGAAGCCGGGGATCCAGAAATATTCGTCCAGATACAGATTGCCTGGCCG 200 Query 2278 GCTCTGTGCGGTGTTGGAATTGGTGCCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCGAT 2337 || ||||||||||||||| ||||||||||||||| || | || |||| | || | Sbjct 199 GCCCTGTGCGGTGTTGGAGTTGGTGCCGAGAAAATGCAATTCAGCCGCGTT-TGGC--AG 143 Query 2338 GACAATCGGGTCGCCGGTCAGGTCGACGTCAACCAGTCGCGCAAACTGGATGATGTATTC 2397 || || | || ||| ||| || || |||||| | ||||||| | ||||||| | Sbjct 142 GATGATGGTTTCCCCGCGCAGCTCCACATCAACCTCTTGCGCAAAGGCGGTGATGTAGTT 83 Query 2398 CCGGAACACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGT 2454 |||| || ||||||| || ||| || | ||| ||||| ||| | || || Sbjct 82 TTTGAACTGGTGCGCCTGCGCCTTGGAGGCGGAAACAAACATCTGATTACGCCCCGT 26 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94763014564740