Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_029120.1 Length=60875 Score E Sequences producing significant alignments: (Bits) Value seq23847 143 1e-29 seq20500 134 5e-27 >seq23847 Length=8263 Score = 143 bits (158), Expect = 1e-29 Identities = 344/513 (67%), Gaps = 18/513 (4%) Strand=Plus/Minus Query 91 CAAATTTGGGACATCGTCACTCAATATGTCGTCAATTTTCCTCGCGTGCTCTGTCAAATG 150 || ||| | ||||| | | ||| | ||||||||||| ||||| || || || | ||| Sbjct 7397 CAGATTAGTGACATTGCCCGCCAAGACTTCGTCAATTTTTCTCGCATGTTCGGTTAGATG 7338 Query 151 ATTAGGTGCAAGGTGTGCGTACCTACGCACCATTTCGATAGACTCCCAGCCGCCCATTTC 210 | || | ||||| || || | | |||||||| || |||||| ||||||||||| Sbjct 7337 GGTTGGGGATAGGTGAGCATAGCGCTGAACCATTTCTATGCTCTCCCATCCGCCCATTTC 7278 Query 211 CTGAAGTACTGACAGCGGTACACCTGACTGAATTAACCAACTGGCCCAAGTGTGGCGGAG 270 || ||| | || || || || |||| ||||| |||||||| ||||| || || || || Sbjct 7277 TTGCAGTGCCGAAAGTGGCACGCCTGCCTGAACCAACCAACTCGCCCACGTATGCCGCAG 7218 Query 271 GTCATGAAAACGGAAATTTTCAATTCCTGCCCGACG--ACATGCTGTTAACCACGATGTG 328 || ||||| ||||||| ||||| |||| || | | |||| ||| | || | Sbjct 7217 ATCGTGAAAGCGGAAATCAGTTATTCCCGCCCTCCGTTTCCCGGTGTT--CCAAGCTGAG 7160 Query 329 TTATAGTCCAGGCGCATCTTTCTGA-TGCTTGGTGTCATTGTCCCGTCAGGCCTTCTGGC 387 |||| || | ||||| || || | ||| | |||| | ||| |||| | | | Sbjct 7159 TTATCATCAACCCGCATTTTCCTAACTGC-CGCGGTCACTCCGCCGCCAGGTCGTTTCCG 7101 Query 388 AGCAGTGGTATAAACAAACACCCAGCGGTGA-TGTTTGCCTATTTGATCACGCAACACCT 446 || || |||| ||||| || | | |||| || || || || ||||||||||| Sbjct 7100 TGCTGTCGTATGCACAAAGACGTA-CCGTGAGTGCTTCCCAATCTGATCACGCAATGTTC 7042 Query 447 TGCAGGCAGTGTCATTCAGTGCGACCCCAATAG-----CGCGGTTTGACTTACTGTCTTC 501 ||| || || || ||||| || || ||||||| | || |||| | || || Sbjct 7041 GGCACGCGGTATCGTTCAGAGCAACGCCAATAGCCTTACCCGCTTTGGC-----GTTCTC 6987 Query 502 AGGGTTTACCCAGGCAACACGTCGCTGCATATCGATTTGTTGCCACTCCAGATTAATAAT 561 |||| | ||| || || || ||||| || | || |||||| |||| || || Sbjct 6986 TGGGTGGATCCATGCCACCTTTCTTTGCATGTCAACCTGCGACCACTCGAGATCGATGAT 6927 Query 562 GTTTGATCTCCTCAGGCCAGTTGCCAGTGCAAA 594 ||||| | | |||||||||||||| ||||| Sbjct 6926 ATTTGAACGGCGTAGGCCAGTTGCCAGGGCAAA 6894 Score = 93.3 bits (102), Expect = 2e-14 Identities = 207/308 (67%), Gaps = 12/308 (4%) Strand=Plus/Minus Query 57463 ACGTGAAGTAATCCCCAGCCAGGTGGTAAATCCTCAATTGAAATAATTCCCGGCTCACTA 57522 |||| || ||||||||||| || | ||||| || || | ||||| || | Sbjct 1781 ACGTTCAGCAATCCCCAGCCTTCAGGCAGCTCCTCGATGCGGATCAGCCCCGGTTCGCAG 1722 Query 57523 ATAAAGAATCGCCAGTCGCCCATTCCAAGAGACGGATTTTTACGAAAACGCTTTTTTCTA 57582 || ||||| ||||| || ||||| || || || | | || || |||||||| | Sbjct 1721 ATGAAGAAGCGCCAATCCCCCATACCGAGCTCAGGTTGAATGCGGAACCGCTTTTTCCGG 1662 Query 57583 TCTGCCAACAAGTCAGCACGAGAACATTTCGCCTCTATCAGGCATGATGCTGAATTTCTG 57642 ||||| | |||||| | || || || || || || |||||||| || || ||| | | Sbjct 1661 TCTGCAAGGAAGTCACCGCGTGAGCACTTGGCTTCGATCAGGCAGGAGGCCAGATTACGG 1602 Query 57643 AATCCCATAGCATCTGGCTGTTCTCCGGTACTGGTTACA---GCTATAAAGCGGTCATGA 57699 || || || || || |||||||| |||| ||| ||| || | |||||| ||||| Sbjct 1601 AAGCCGATTGCGTCAGGCTGTTCGCCGG---TGGAGACAGCGGCAACAAAGCGATCATGG 1545 Query 57700 AAACAAACCTTGAACCCG---TTGCGCTTAAGGAACTTGTACGCAATCTGACAGAGTTCG 57756 ||| ||| ||| ||| |||||| |||||| | |||||| | || ||| || Sbjct 1544 AAAGCGACCGAGAAACCGTTATTGCGC---AGGAACCGCTCGGCAATCAGGCATAGTGCG 1488 Query 57757 CGGTGTGT 57764 | ||| || Sbjct 1487 CTGTGCGT 1480 >seq20500 Length=13099 Score = 134 bits (148), Expect = 5e-27 Identities = 200/282 (71%), Gaps = 4/282 (1%) Strand=Plus/Plus Query 25728 AAGGCGCTGGCATGGGTGGCGAAGAACATCAGAGTGCCACTGACTGAACCCCAGAAAGCG 25787 |||||||| | ||||| | ||| ||| || | ||||||||||| || |||| Sbjct 3405 AAGGCGCTCGATTGGGTAGACCGCAACGTCAAGGTAACGCTGACTGAACCGCAAAAAGTC 3464 Query 25788 GGTATTGCGTCATTCTGTCCTTACAACATTGGCCCCGGTAAGTGTTTCCCGTCGACGTTT 25847 || || ||||| ||||| |||| ||||| |||||||| ||||| ||| | || || ||| Sbjct 3465 GGCATCGCGTCCTTCTGCCCTTGGAACATCGGCCCCGGAAAGTGCTTCACCTCAACCTTT 3524 Query 25848 TATAAACGAA--TTAATGCAGGTGATCGAAAAGGTGCCTGCGAAGCGATTCGCTGGTGGA 25905 || || ||| | || || || || || | ||||||||| | || ||| | |||| Sbjct 3525 TACAA--GAAGCTGAACGCCGGCGACCGCATTGGTGCCTGCCGCGAAATCCGCCGCTGGA 3582 Query 25906 TTAAGGACGGTGGCAGAGACTGCCGTATCCGCTCAAATAATTGCTACGGTCAGGTATCAA 25965 | | |||| |||| |||| ||||| |||||||| |||| || ||||| ||| | | Sbjct 3583 TATACGACGCTGGCCGAGATTGCCGCATCCGCTCGAATAGCTGTTACGGGCAGATCTTGC 3642 Query 25966 GACGTGACCAGGAGAGTGCGCTGTCATGCTGGGGTATCGACA 26007 | || ||||| ||| | |||| | |||||||| | |||| Sbjct 3643 GGCGCGACCAAGAGGCCGAGCTGGCTTGCTGGGGGCTGGACA 3684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194143711637484