Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2976 114 1e-20 seq2002 111 1e-19 >seq2976 Length=93210757 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 |||||| || | || |||||||| || ||||| || || || || ||||| ||||| | Sbjct 73918709 CACAATACATTACCTCATCTCTGCTGATAAGTTCATTGGAGAAAGTCAATCCAGGCATCA 73918768 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677 || ||||| || |||||||||||||| |||||||| || |||||||| |||||||| | Sbjct 73918769 GGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAA 73918828 Query 4678 CGGCGGCAAACGCTAC 4693 | || ||||| || || Sbjct 73918829 CTGCAGCAAAGGCAAC 73918844 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 4938 TTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTAC 4997 || || ||||| || || |||||||||||||| || || | || |||||| ||||||||| Sbjct 73922895 TTCTCATTTACAATTCCATCACTGGCTGCAAAGAAGGCGAGAATATGAGAGATAAAGTAC 73922954 Query 4998 TGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAAC 5050 | ||| || || || || || |||||||| || | || || | ||||||||| Sbjct 73922955 TTTTCATCTGGTTTTAGCTTGTTCCAGTGAGGAAGGTCCTTTGATAAATCAAC 73923007 >seq2002 Length=109662234 Score = 111 bits (122), Expect = 1e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||| || || || ||||||||||| || | ||| |||||||| ||||| || || Sbjct 93266411 TCATCTCTACTGATGAGCTCGTTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 93266352 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||| || | ||||| || ||||||||||| || ||||| || || ||||| ||| Sbjct 93266351 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 93266292 Query 4692 ACTA 4695 |||| Sbjct 93266291 ACTA 93266288 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| || ||||| || || || || |||||||| |||||||||||||| || ||| Sbjct 93264765 TCTTTAATGTACGTGTCAATGAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCA 93264706 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||| || || || || || | ||||||||| | ||| ||||| Sbjct 93264705 ATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGCACTTC 93264662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425845833388238