Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq8367 109 1e-18 seq7705 107 4e-18 >seq8367 Length=9740059 Score = 109 bits (120), Expect = 1e-18 Identities = 159/222 (72%), Gaps = 7/222 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| || | | || | |||||| Sbjct 8892973 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCATCT 8892914 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || |||||||| ||||||||||| || | | || |||||||| ||| Sbjct 8892913 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCT 8892854 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| || ||| | || | | |||| ||| ||| || || || || || Sbjct 8892853 TGGATTTTGGCCTTCACATTTTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATG 8892797 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT-TTTACC 152110 || ||||| || || |||||||| |||| |||||| |||||| Sbjct 8892796 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATGTTTACC 8892755 Score = 104 bits (114), Expect = 5e-17 Identities = 158/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | || || || || || || || ||||| ||||||||||| || | | || Sbjct 8893666 CTGAGGCGCAGCACCAGGTGCAGGGTGGATTCTTTCTGGATGTTGTAGTCAGACAGGGTG 8893607 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | ||| ||||| || || || || ||||| ||||||||||| || | | || ||| Sbjct 8893606 CGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCT 8893547 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || || ||||| || || || ||| |||| | | |||| ||| ||| || ||| Sbjct 8893546 TCTTTGTCTTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCA 8893490 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || ||||| || || || ||||| |||| |||||| Sbjct 8893489 AGAGTGATGGTCTTGCCAGTAAGGGTTTTCACAAAGATCTGCAT 8893446 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| || | | || | ||| ||| Sbjct 8893201 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 8893142 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | || |||||||| ||| Sbjct 8893141 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCT 8893082 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || ||||| || || | || | | |||| ||| ||| || || || || || Sbjct 8893081 TGGATTTTGGCCTTCACGTTTTCAATGGTGTC---ACTGGGCTCAACCTCGAGGGTGATG 8893025 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || |||||||| |||| |||||| Sbjct 8893024 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 8892990 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 || || || || || |||||||| ||||||||||| || | | || | || ||||| Sbjct 8893426 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCGTCTTCC 8893367 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || || || || ||||| ||||||||||| || | | || |||||||| ||||| Sbjct 8893366 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCCTTGTCTTGG 8893307 Query 152016 ATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATAGTT 152072 || || || ||| | || | |||| ||| || || ||||| || || || Sbjct 8893306 ATCTTGGCCTTCACATTTTCAATAGTGTC---ACTGGGTTCAACCTCAAGGGTGATGGTC 8893250 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || || |||||||| |||| |||||| Sbjct 8893249 TTGCCAGTAAGGGTCTTCACAAAGATCTGCAT 8893218 >seq7705 Length=13065498 Score = 107 bits (118), Expect = 4e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| || | | ||| | ||||||| Sbjct 4578631 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCATCT 4578572 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||| ||||| || | | || || ||||| || Sbjct 4578571 TCCAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGATCAGGGGGAATGCCCTCCTTGTCC 4578512 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || |||||| |||| | | |||| | ||| || || ||||| || || Sbjct 4578511 TGAATCTTGGCCTTGACATTCTCAATGGTGTCACTAGGCTCGACCTCCAGAGTGATGGTC 4578452 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| | |||||||| |||| |||||| Sbjct 4578451 TTACCCGTCAAGGTCTTCACAAAGATCTGCAT 4578420 Score = 100 bits (110), Expect = 7e-16 Identities = 152/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||||||||| ||||| ||||| || ||||||||||| || | | ||| | ||||||| Sbjct 4578859 AGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCATCT 4578800 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | || || ||||| || Sbjct 4578799 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCC 4578740 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| || || || | || || Sbjct 4578739 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGTTCAACCTCCAACGTGATG 4578683 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || | |||||||| |||| |||||| Sbjct 4578682 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 4578648 Score = 93.3 bits (102), Expect = 1e-13 Identities = 153/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || ||||| || ||||||||||| || | | ||| | ||||||| Sbjct 4578403 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCATCT 4578344 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| ||||||||||| || | | || || ||||| || Sbjct 4578343 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCC 4578284 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGT--CTGAACTCTCTACTTCAAGAGTAATAG 152070 || || || |||||| |||| | | | | ||| || | || |||| || || | Sbjct 4578283 TGGATCTTGGCCTTGACATTCTCGATGGTATCACTGGGTTC-CACCTCCAAG-GTGATGG 4578226 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | ||||| || | ||||||||||||| |||||| || Sbjct 4578225 TCTTGCCAGTCAAGGTCTTCACGAAGATCTGCATGTT 4578189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150401622968906