Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_031924.1 Length=47564 Score E Sequences producing significant alignments: (Bits) Value seq27876 161 3e-35 seq28775 98.7 3e-16 >seq27876 Length=5349 Score = 161 bits (178), Expect = 3e-35 Identities = 236/334 (71%), Gaps = 0/334 (0%) Strand=Plus/Minus Query 31101 CAAAAACATCACCAAATACCAGCCTGAAAGCGCAGACGAACATTGCGCGCAACGGAGAGG 31160 |||| || || || || | ||||||||||| ||| || ||||||||||| ||||| |||| Sbjct 4836 CAAAGACCTCCCCGAACAACAGCCTGAAAGGGCAAACCAACATTGCGCGAAACGGTGAGG 4777 Query 31161 CGCGACCTGATAACTTCGGGCAGATTCGTGCGTTTCCTGATTTGCTTCAGGAATCATTAT 31220 | ||||| |||| ||| ||| | || |||| ||||| || ||||||| || | | Sbjct 4776 CAAAGCCTGACAACTACGGCCAGGTGCGCGCGTACCCTGACCTGATTCAGGAGTCGCTGT 4717 Query 31221 TCGAATATATCAATAATATTAAGTACGTCACCGAGTTCATGAATTTTGGCCTCGGCAAAT 31280 |||| || ||| || || ||| | ||||| |||| ||||| || || |||||| | Sbjct 4716 TCGAGTACGACAACAACATCAAGAAAGTCACAGAGTGGATGAACTTCGGGCTCGGCCGGT 4657 Query 31281 ATGATGTTTCCTCTGTGCGTTACTCGGAATCAAATCTTGGTTCACTGGCTGGAGCGAGTT 31340 |||| || | || || | ||||| ||||| || || || | |||||||| || | Sbjct 4656 ATGACGTCACGTCAGTAAGGTACTCAGAATCGAACCTGGGAGCGCTGGCTGGCGCTTCAT 4597 Query 31341 ACACCATTTATCAGCCAGGAGAAGTTATTCCGGTTGTGTATGAGCCTTATGCTTTTGATG 31400 || ||| || |||||||| || ||||||| | | ||||| | ||||| || | Sbjct 4596 ACCGCATCTACCAGCCAGGCGAGAATATTCCGCTGATCAATGAGGGGTTCGCTTTCGACG 4537 Query 31401 ATGTTGACGGTCAGGAACTGTATGGACCAAACGA 31434 | | ||||| ||||| || ||| || ||||| Sbjct 4536 ACATCGACGGACAGGAGCTTCCTGGGCCGAACGA 4503 >seq28775 Length=3350 Score = 98.7 bits (108), Expect = 3e-16 Identities = 114/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 28474 AACGGTGGCCCTGTTAGCGCAGGAAGTATGTACGAAGTGGGTGAGGGAAACGCA-CCAGA 28532 ||||| |||||||||||||| || |||||| | || ||||| | || | | ||||| Sbjct 1826 AACGGCGGCCCTGTTAGCGCTGGCGCGATGTACCAGGTAGGTGA-GCAAGGGAAGCCAGA 1884 Query 28533 AATATTCCAGGCGAGCACAGGCAGGCAATACATGATACCTGGTAACTCAGGAAAGGTTAT 28592 || | |||||||||||| || | ||| |||||||| || ||| || || ||||| || Sbjct 1885 GATTTACCAGGCGAGCACTGGTAAGCAGTACATGATCCCCGGTGACAACGGCAAGGTGAT 1944 Query 28593 CAGCAATAAGGATATTCCCGGTGGAGGTGGT 28623 |||||| ||||| || | || || |||||| Sbjct 1945 CAGCAACAAGGACATGCAAGGCGGTGGTGGT 1975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151665500259432