Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq8060 147 3e-30 seq6691 140 5e-28 >seq8060 Length=10292962 Score = 147 bits (162), Expect = 3e-30 Identities = 218/309 (71%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 8277 CATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACT 8336 |||| || || ||||| || | |||||||| ||| |||||| || || || || Sbjct 8604097 CATCCGGCACACGGAATGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCT 8604038 Query 8337 GAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCC 8396 | | ||| ||||||||||| |||| || ||||||| ||||| |||||||||| Sbjct 8604037 CCAGTGATGCTGTCTTGACGATCTCGAAGCCGGTTGCTCCGCCAAAGGTACTGGGCTTCC 8603978 Query 8397 AGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCA 8456 ||||| | |||||||||||| ||| | | || || || || || || |||||||| | Sbjct 8603977 AGTACTCTGGGGAGCAGATGGGATTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCCCCAA 8603918 Query 8457 ACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGG 8516 ||| | ||||| || || |||||| ||||||| |||| || || | || ||||| | Sbjct 8603917 TCTCCACCATGCTTTCCCCAAAGATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAATCCTG 8603858 Query 8517 TGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCT 8576 || | ||||| ||| || | |||||| || || || || || || || ||| || Sbjct 8603857 GATAAAACTCCAGAGCATCAATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTTCT 8603798 Query 8577 TTTCTCCTG 8585 ||||||| Sbjct 8603797 CCTCTCCTG 8603789 >seq6691 Length=29209805 Score = 140 bits (154), Expect = 5e-28 Identities = 176/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| || ||||| || || ||||| ||| ||| |||||||| || ||||||| Sbjct 579570 ATGAGTCTTGTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAG 579629 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || || || |||||||| || ||||| || || || |||||||| || || || Sbjct 579630 ATGTCACAGACTCTATTGTGTTCTCTCAGCCATATCGTTGCATACATCATTAGGCCTGGG 579689 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| |||||| |||| || || |||| | ||| || || || || | ||||| Sbjct 579690 ACCAAGCCAAACACCTCCTGCCCAACAGAAAACTGCAGGTGCTCAGGAACGTGAGGAGGG 579749 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | | || ||| || || | || ||||||||||| || ||||||||| Sbjct 579750 TAGATCATCTCTGCTTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 579809 Query 9484 TG 9485 || Sbjct 579810 TG 579811 Score = 136 bits (150), Expect = 6e-27 Identities = 218/309 (71%), Gaps = 3/309 (1%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | || Sbjct 577564 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAGGGAGGCAG 577623 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | |||||||| | ||| || |||||||| |||||||| ||| | |||| Sbjct 577624 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTGCTTGGCTTCCAATACTCAGGGG 577683 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||| || || |||| || ||||| || |||||||| || || | || | || Sbjct 577684 AGCATATTGTATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCGCCAATTTCTACCATTG 577743 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAGCTCC 8527 | ||||| |||||||| || | |||||||| || ||||| || | ||||| ||| Sbjct 577744 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTAC-AAGAAGGCCTGGATACAGTTCC 577802 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT- 8586 | ||| || | |||||||||||| | ||||| ||||| || || ||||||||||| Sbjct 577803 ATAGCATCTATGTCTCCGTAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCTGTA 577862 Query 8587 TTTATTAAT 8595 |||||||| Sbjct 577863 ATTATTAAT 577871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714804255405440