Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Meleagris_20gallopavo_20[refseq_20GCF_5F000146605.2_202014-11-24] 231,286 sequences; 1,128,339,136 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq8367 127 5e-24 seq7705 120 7e-22 >seq8367 Length=9740059 Score = 127 bits (140), Expect = 5e-24 Identities = 162/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| || || || || || ||||| || ||||| || || ||| Sbjct 8893449 CAGATCTTTGTGAAAACCCTTACTGGCAAGACCATCACTCTTGAGGTTGA--GCCCAGTG 8893506 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || ||||| || ||||||||||| || ||||| || |||| Sbjct 8893507 ACACCATTGAGAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAGC 8893566 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||| || | || || | || || ||| Sbjct 8893567 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACA 8893626 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| |||||||| || ||||| || || || | |||||| Sbjct 8893627 TCCAGAAAGAATCCACCCTGCACCTGGTGCTGCGCCTCAGA 8893667 Score = 118 bits (130), Expect = 3e-21 Identities = 161/222 (73%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| || |||| | || || ||||| || || || || || || ||||||||||||| Sbjct 8892754 AGGTAAACATGC---AGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGG 8892810 Query 177970 TGGAAAGCTCA--GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 | | ||| || |||||||| || || || || || || || ||||| ||||| || Sbjct 8892811 TTG--AGCCCAGTGACACCATTGAAAATGTGAAGGCCAAAATCCAAGACAAGGAAGGCAT 8892868 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||||| || ||||| | || |||||||| || || ||||| ||||||||| | || || Sbjct 8892869 TCCTCCCGATCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGACGCACCCT 8892928 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||| |||| || || || || ||||| || || Sbjct 8892929 GTCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGT 8892970 Score = 109 bits (120), Expect = 1e-18 Identities = 158/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || || ||||| || || || || || || |||||||||||||| | ||| || | Sbjct 8892993 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTTG--AGCCCAGTG 8893050 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| || ||||| || || || || ||||| ||||| || ||||| || |||| Sbjct 8893051 ACACCATTGAAAACGTGAAGGCCAAAATCCAAGACAAGGAAGGCATTCCTCCCGATCAGC 8893110 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| ||||| || | || || | || || ||| Sbjct 8893111 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAACA 8893170 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || || ||||| || || || | || ||| Sbjct 8893171 TCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGA 8893211 >seq7705 Length=13065498 Score = 120 bits (132), Expect = 7e-22 Identities = 150/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || || || |||||| | ||||||||| | || Sbjct 4578195 CAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCTTGGAGGTGGAACCCAGTGAT 4578254 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| ||||| ||||| |||||||| || || || || || || ||||| Sbjct 4578255 ACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAGCAG 4578314 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 | || ||||| || || || ||||| |||||||| | ||||| | || || ||| || Sbjct 4578315 AGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCTGACTACAACATC 4578374 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 4578375 CAGAAGGAGTCCACCCTGCACCTGGT 4578400 Score = 113 bits (124), Expect = 1e-19 Identities = 151/208 (73%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || | || || || || ||||| || ||||| || || || Sbjct 4578423 CAGATCTTTGTGAAGACCTTGACGGGTAAGACCATCACTCTGGAGGTCGA--GCCTAGTG 4578480 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| ||||| |||||||||||||| || || || || || || |||| Sbjct 4578481 ACACCATTGAGAATGTCAAGGCCAAGATTCAGGACAAGGAGGGCATTCCCCCTGATCAGC 4578540 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 || | || ||||| || || || ||||| |||||||| | ||||| | || || ||| Sbjct 4578541 AAAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACTCTGTCTGACTACAACA 4578600 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 4578601 TCCAGAAGGAGTCCACCCTGCACCTGGT 4578628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200164120891484