Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq25055 105 5e-18 seq25194 98.7 7e-16 >seq25055 Length=2582048 Score = 105 bits (116), Expect = 5e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 4294 AGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAATT 4353 || ||| ||||||| || | |||||||||| |||| | ||| || |||||||||||||| Sbjct 107821 AGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTCAGAGGACGATTCTTCTCAGGAATG 107880 Query 4354 GAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 |||||||| || ||||||||||| |||| |||||||||| ||| Sbjct 107881 GAGAACCAGGTTTTTTTACCCATTATCAAGGCATTCTGTTTACCTG 107926 >seq25194 Length=36020201 Score = 98.7 bits (108), Expect = 7e-16 Identities = 134/183 (73%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| ||||||||||| || |||||||||||||| ||||| || ||||| | |||||| | Sbjct 29884426 CTTTGTATTCTGCTCCAAAGTGCCTCCACTGAAAACCATAAACTGGTCCCAAATCTCCCT 29884485 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||||| ||||| | ||||| | || | || ||||| |||||||| | Sbjct 29884486 CCTCTCTGGTGCTGAAACCCTGCTTATCCAGGAACTCACGCGAACCATTAGCATCCCAGA 29884545 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACA-AC 102211 | | ||| || ||| || ||||||||| | ||||| || || ||||| |||| || Sbjct 29884546 TCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC-CT-ATAAAACACAGAC 29884603 Query 102212 AGT 102214 ||| Sbjct 29884604 AGT 29884606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361140197892212