Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq12986 125 6e-24 seq25086 107 2e-18 seq25033 91.5 1e-13 >seq12986 Length=1393 Score = 125 bits (138), Expect = 6e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||| || ||||| |||||||| ||||| || || || ||| Sbjct 1113 ACCTCCTCTTTGCTGGTATACTCCACGATTTCTGTACATAGGTTGCTGCATTTGATGGTG 1054 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || | ||||| || || |||||||||||||| || ||| Sbjct 1053 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTG 994 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 || ||||| ||||||||||||||| || Sbjct 993 CCGGTCTCAGTCTGCGACTCGATGATGGC 965 >seq25086 Length=707082 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || ||||| || ||||| |||||||| ||||| || || || ||| Sbjct 60485 ACCTCCTCTTTGCTGGTATACTCCACGATTTCTGTACATAGGTTGCTGCATTTGATGGTG 60544 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || | ||||| || || |||||||||||||| || ||| Sbjct 60545 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTG 60604 Query 23168 CCCGTCTCGACCTGCGA 23184 || ||||| |||||| Sbjct 60605 CCGGTCTCAGTCTGCGA 60621 >seq25033 Length=1520908 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| || || ||||| || |||||| | || ||||| || Sbjct 769878 CATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAG 769937 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || |||||| |||||| | || || ||||| Sbjct 769938 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGCATTCCCCCTGACCA 769997 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || ||||||||||| ||| ||||||| || || || || || Sbjct 769998 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 770057 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || ||||| || || ||||| || || | |||||||| || Sbjct 770058 CATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGCCTGAGGGGTGG 770105 Score = 82.4 bits (90), Expect = 7e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || || || ||||| ||||||||||| || ||||| | || || || || Sbjct 769650 CATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACTCTGGAGGTGGAGCCCAG 769709 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||| || |||||| | || || ||||| Sbjct 769710 TGACACCATTGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCACCAGACCA 769769 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||| | | || ||||||||||| ||| ||||||| | | | || || || || | Sbjct 769770 GCAGAGGTTGATCTTCGCTGGCAAGCAGCTGGAAGA-TGGACGCACCCTGTCTGACTACA 769828 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||| || || ||||| || || ||||| || || | ||||| || || Sbjct 769829 ACATCCAGAAGGAATCCACCCTCCATCTTGTGCTGCGTCTGAGAGGTGG 769877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445625916719040