Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq24926 123 3e-23 seq25185 114 2e-20 seq25193 93.3 6e-14 seq25086 87.8 2e-12 >seq24926 Length=246971 Score = 123 bits (136), Expect = 3e-23 Identities = 146/195 (75%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 9228 TATTTCTTATTAGATACTTCCAA-AAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||||| |||||| || | |||| |||| ||| || |||| ||||||||||||||| || Sbjct 120902 TATTTTTTATTAAATGCCTCCAGGAAGC-GTAGTAGGTGCAGGAACAGATTGATGATGTC 120960 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 |||||||| |||||| | || | | || |||||||| || | || || || || | Sbjct 120961 CAAGTAGAGATTGATCGCAGCCAGTATGTACTCTTCAGGGGATAATTTGTGCATCAGCAA 121020 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 || |||||||| ||||| ||||| ||||||| ||| || ||| ||||| | |||| Sbjct 121021 ATGAGTGTCATAAATAATAAATCCACAGAATAGAAGAGCTCCAGCAGCAGCAAACACCAC 121080 Query 9407 CTCCACTGTTTCACT 9421 ||| | ||| ||||| Sbjct 121081 CTCTATTGTCTCACT 121095 Score = 98.7 bits (108), Expect = 1e-15 Identities = 90/114 (79%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| | | ||||| ||||||||||| || | |||||||||||||| ||||| Sbjct 122183 CCTGCTCCAAATCTGCTGAAGTCTCTCTTTGACTGCAAGGTATATGCAGTCAGGCCAAGA 122242 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAA 9593 || || |||| ||| || || || ||||||| |||| |||||||||||| Sbjct 122243 AATACAGCAGCAGTAAGAATAAAGGCTTGCAAGACGATGGAGACATCATAGAAA 122296 >seq25185 Length=22297774 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | ||| ||||| || || || || ||||| ||||| | ||| | Sbjct 15031339 CCTCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGCCCTGGCATCAGGCCCCTCTTCT 15031398 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 15031399 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 15031458 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 15031459 CAACCACTCTCTCACC 15031474 >seq25193 Length=27607347 Score = 93.3 bits (102), Expect = 6e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 36410 TCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTT 36469 || ||| |||||||| || || ||||| | |||||| |||||||||||||| |||||| Sbjct 23151711 TCTTTAGAATCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCCGAATGTATGTTT 23151652 Query 36470 TCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || ||||| || || || || |||||||| | ||| || || | || |||||| Sbjct 23151651 TCCATGGCAATCTGGAAGCCATAGAAACAGCGAGCTTCTGTGACTTGCACTTCT 23151598 >seq25086 Length=707082 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| || || || ||||| || || || ||| ||| | || ||||| || ||||| | Sbjct 51814 TCCAGCCATAGAAGTGCATGCTGGTGAGCTTGCCATAGTTGGGCTCTGCAATGTGGATGT 51873 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | || || || ||||||||||| ||||| |||||||| ||||| || | ||| || | Sbjct 51874 TGAGGGACTGGCTCTGATCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATGGTTT 51933 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | || ||||| | ||| || || | |||| | || || |||| Sbjct 51934 TCTGGGAGATCTCCCACACAGTCTTGTAGAGCTGCTTCAGGTCATCCGGAA 51984 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| |||||||||||||||||||| || | || | ||||||| || || Sbjct 62355 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGCGCAAAGAAAAGGTCTCTGGCTCGTTGC 62414 Query 66120 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGT 66179 || || || || || ||||| || | || || ||| | | || || ||||||| || Sbjct 62415 TCTTCTTTCCCAGTGTTCTTCTTCAAGTCCAGAAACTCAAAGATGTCCAAATGCCAGGGC 62474 Query 66180 TCCAAGTATATGGCCATAACTCCAGG 66205 |||| ||| ||||| | | | ||||| Sbjct 62475 TCCAGGTAGATGGCAAAAGCCCCAGG 62500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657965376842080