Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq25188 87.8 9e-13 seq25179 84.2 1e-11 seq25109 82.4 4e-11 >seq25188 Length=24126677 Score = 87.8 bits (96), Expect = 9e-13 Identities = 70/84 (83%), Gaps = 1/84 (1%) Strand=Plus/Plus Query 11447 AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCT 11506 ||| ||||| ||||| | |||||||||| ||||||| ||||||||||||| ||||| Sbjct 1649238 AAAACAAAT-GGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCT 1649296 Query 11507 CTRACCAACTGAGCTAATGGGCCG 11530 || |||||||||||||| ||||| Sbjct 1649297 CTAACCAACTGAGCTAACCGGCCG 1649320 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1655741 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1655800 Query 11528 CC 11529 || Sbjct 1655801 CC 1655802 >seq25179 Length=14121063 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 7639606 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 7639547 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 7639546 CTGAGCTAACCGGCC 7639532 >seq25109 Length=1512814 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 375693 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 375634 Query 11528 CC 11529 || Sbjct 375633 CC 375632 Lambda K H 0.639 0.410 0.922 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261410851272112