Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq25159 170 3e-37 seq9637 122 1e-22 seq25150 113 6e-20 >seq25159 Length=8155271 Score = 170 bits (188), Expect = 3e-37 Identities = 229/315 (73%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||| | | |||| Sbjct 7937716 GGAAAGCTGTGAAGGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGATGCAG 7937775 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||| || || | ||| || |||||||| || |||||||| | |||| Sbjct 7937776 TATTGATTATTTCAAATCCAACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 7937835 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || ||||||| ||||| || || || || || || | ||| | || Sbjct 7937836 AGCAGATAGCATTTCCCATGAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATTG 7937895 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAACTCC 8917 | |||||||||||||| || || |||||||| | |||||| || | ||||| |||| Sbjct 7937896 TTTCACCGAAGATGGCACCTGGTCGTGGCTTTTCTA-CAAGAAGGCCTGGGTACAGCTCC 7937954 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT- 8976 | ||| || |||||||| ||||| | ||||| || || ||||| ||||||||||| Sbjct 7937955 ATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTA 7938014 Query 8977 -TTTATTAATaaaaa 8990 || ||||||||||| Sbjct 7938015 ATTGATTAATAAAAA 7938029 Score = 131 bits (144), Expect = 2e-25 Identities = 174/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||| || || ||||| || || ||| ||| ||||| || || ||||||| Sbjct 7939768 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGG 7939827 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||| ||||| ||||| || ||||| |||||||| || || || Sbjct 7939828 ATGTCACAGACCCGGTTGTGCTCCCTCAGCCATATTGTAGCATACATCATCAGGCCTGGG 7939887 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| ||||| ||||||| || |||| | ||| | ||| || | | ||||| Sbjct 7939888 ACCAAACCAAACACCTCTTGCCCAACAGAAAACTGCAAGTGTTCTGGTATGTGAGGAGGG 7939947 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || || | || ||||||||||| || ||||| ||| Sbjct 7939948 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 7940007 Query 9862 TG 9863 || Sbjct 7940008 TG 7940009 >seq9637 Length=1534 Score = 122 bits (134), Expect = 1e-22 Identities = 325/491 (66%), Gaps = 18/491 (4%) Strand=Plus/Plus Query 79248 TCATCAGCCTCCGATCTAATTGTGCGTTCTGATTGTTCCCAAAACGTGTATTCACAGGT- 79306 || || || || || | ||| || ||||| || |||||| || ||| | |||||| Sbjct 424 TCTTCGGCTTCGGAACGAATAGTACGTTCCGAGGCTTCCCAGAAGGTGAGCTGACAGGTG 483 Query 79307 --ATTATTAGCTTCCTCAACAATATCCCACGACATAAGCACATCTGGCCGTTCaaaaaaa 79364 ||| || | |||| | ||||||| || || | | |||| ||||||| |||| Sbjct 484 ACATTCTTCTCGTCCTGTA---TATCCCAGGAGATCACCGAGTCTGCACGTTCAAGAAAA 540 Query 79365 CCCACAAGCGGATGCGCAACTTCTGGAGCATTGTCTCTTCCATAGTACGCAATCATAGAA 79424 |||| | | || | || | || ||| |||||||| ||| | || |||| Sbjct 541 GCCACCAACCTGTGGGTCTCTGGCGCAGAATTCGCTCTTCCAAAGTCAGAAACAATAGTG 600 Query 79425 TAGTTCTTTCTGACGGAAAATTTGTCACGGTTTTCTCCAAAAT-GCT--TATTG---TTA 79478 |||||| | | |||| ||||| |||||||||||| | ||| ||||| || Sbjct 601 TAGTTCGGGAAAATGAAAAACTTGTCGGCGTTTTCTCCAAAGTAGCTGGTATTGCGATTG 660 Query 79479 GATCCATTGTAAAAAGGAGAAATGTCCACAACTTTACCATCAGAAGTCACAAAAAAGTCA 79538 | ||| || || |||||||||||||| || || | ||| || || | ||||| | Sbjct 661 GTTCCGTTATAGAAAGGAGAAATGTCAACCACGTCACCCGTGGACGTGGCGAAAAAATGG 720 Query 79539 TAGGGGTACTTAGATCTAGCTGTAGTTACGGTCACCATGCAATTTACATTACAACTTGTA 79598 || || ||||| || | || ||||| | ||||||||| || || | |||||| | | Sbjct 721 TAAGGATACTTGGAACGCGCAGTAGTGATGGTCACCATACAGTTCAGATTACAGGTCTCA 780 Query 79599 GTATACAGCCAGGTACTGCCAGGTTTGTGCCAAAGTTCTTTCACAGTCACAAAGCGGGAA 79658 ||| |||||||| || || | ||||||| | || || || ||||| | ||| Sbjct 781 CGATAGAGCCAGGTGCTACCGCGGCTGTGCCACTGATCCTTGACCGTCACGTAACGGATG 840 Query 79659 CTATGAGTATTGGAGAAATCATC---CTCAACCAGAAGCATAGTTTCATTCACATAACTG 79715 || || || ||||| |||| || | || ||| || |||| || |||| ||| Sbjct 841 CTGTGGGTGTTGGAATAATCGTCGAGCATTACTAGACGC---GTTTTGTTTTCATAGCTG 897 Query 79716 TCCCTGTGATA 79726 ||||| ||||| Sbjct 898 TCCCTATGATA 908 >seq25150 Length=5065642 Score = 113 bits (124), Expect = 6e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 |||| || ||| |||| || |||| || ||||| |||||||||||||| | |||| Sbjct 3895237 TCTTCACTATCTCAAAGCCAGTTGCTCCACCAAAGGTACTGGGTTTCCAGTATTCTGGGG 3895296 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||||||| ||| | | || || || |||||||| ||||| || | ||| | |||| Sbjct 3895297 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAATGGAGCTCCAATCTCCACCATGC 3895356 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | || || ||||| | ||||| |||| || || | || || || | || ||||||| Sbjct 3895357 TTTCCCCAAAGATTCCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCCGGATAGAACTCCA 3895416 Query 8919 CAGCCTCGATGTCTCCGTAAAG 8940 ||| || |||||||| || || Sbjct 3895417 GAGCGTCAATGTCTCCATATAG 3895438 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708301508409280