Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq25033 107 2e-18 >seq25033 Length=1520908 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| ||| | || | || |||||||| || | ||| || || | Sbjct 769877 CCACCTCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 769818 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||||||| || || | ||||| || || ||||| ||||| ||| Sbjct 769817 AGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGA 769758 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | || || ||||| || | | |||||| | | || || Sbjct 769757 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACC 769698 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || || || || || ||||||||||||||||||| Sbjct 769697 TCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATGC 769649 Score = 104 bits (114), Expect = 2e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||| ||||||| |||||||||||| || | ||| || ||| || |||| | Sbjct 769637 CGCAGCACTAAGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCA 769578 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || || | ||||| ||||| ||||| ||||| ||||| ||||| ||| Sbjct 769577 TCCTCCAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCTGGCGGAATGCCTTCCTTG 769518 Query 94913 TCATAAATTTTTGCCTTGAC 94932 || | || || ||||| || Sbjct 769517 TCCTGGATCTTGGCCTTCAC 769498 Score = 102 bits (112), Expect = 7e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 94883 CTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACA 94942 || ||||| || |||||||| ||||||||||| | ||||||||||| || | | Sbjct 769317 CTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTTTGCCTTCACATTCTCAATG 769258 Query 94943 GTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATC 95002 |||||| | | || || |||| |||||||| || |||||||| || |||||||||||| Sbjct 769257 GTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTCTTCACAAAGATC 769198 Query 95003 TGCATG 95008 |||||| Sbjct 769197 TGCATG 769192 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| ||| | || | || |||||||| || | ||| || || | Sbjct 770105 CCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAC 770046 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| ||| |||||||| || || | ||||| | || ||||| || || ||| Sbjct 770045 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 769986 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||||||||| | || || ||||| || | | |||||| | | || || Sbjct 769985 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACT 769926 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || | |||||||| || |||||||| || || |||||||||||||||| Sbjct 769925 TCCAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCATGC 769877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448149921028320