Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq25183 165 1e-36 >seq25183 Length=17108971 Score = 165 bits (182), Expect = 1e-36 Identities = 193/261 (74%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 8331967 CGCTAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 8332026 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 8332027 CCGCCGCTTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 8332086 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| ||||| | ||||| ||| ||| |||| || || || ||||||||| Sbjct 8332087 TCGCGGTGTGCTGAAGGTTTTCCTGGAGAACGTGATCCGCGACGCAGTCACCTATACCGA 8332146 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||||| | |||||||| || ||||||| | |||||||| ||||| || || || Sbjct 8332147 GCACGCTAAGAGGAAGACTGTGACGGCCATGGACGTGGTCTATGCTTTGAAGCGCCAGGG 8332206 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 8332207 ACGCACACTCTACGGTTTCGG 8332227 Score = 159 bits (176), Expect = 5e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 8428969 CGCCAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 8428910 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| ||||| || || |||||| |||| || | |||| || |||| Sbjct 8428909 CCGCCGCTTGGCTCGGCGTGGCGGCGTGAAGCGTATCTCGGGGCTCATCTACGAGGAGAC 8428850 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| ||||| |||| || ||| ||| |||| |||||| || ||||| || Sbjct 8428849 TCGCGGTGTGCTGAAGGTCTTTCTGGAGAACGTGATCCGTGATGCCGTCACTTATACGGA 8428790 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| || ||| | ||||| | |||||||| ||||||| || || Sbjct 8428789 ACACGCCAAGAGAAAGACGGTGACCGCTATGGACGTGGTCTATGCGCTGAAACGCCAGGG 8428730 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 8428729 CCGCACTCTCTACGGTTTCGGCGGTTAA 8428702 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 8362056 CGCTAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 8362115 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 8362116 CCGCCGCTTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 8362175 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| | ||||| ||| ||| || | || || || ||| || || Sbjct 8362176 GCGCGGCGTCTTGAAGGTTTTCCTGGAGAACGTGATTCGCGACGCAGTCACCTACACGGA 8362235 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| ||||||| | |||||||| |||| || || || Sbjct 8362236 GCACGCCAAGAGGAAGACTGTGACCGCCATGGACGTGGTCTATGCTCTGAAGCGCCAGGG 8362295 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | ||||||| ||||| ||||| Sbjct 8362296 TCGCACTCTTTATGGCTTTGGCGGTTAA 8362323 Score = 154 bits (170), Expect = 2e-33 Identities = 195/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| | || || || |||||||| || ||||||||||| || || Sbjct 8364013 CGCTAAGCGCCACCGCAAAGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 8363954 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 8363953 CCGCCGCTTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 8363894 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || |||||| | ||||| ||| ||| || | || || || ||| || || Sbjct 8363893 GCGCGGCGTGTTGAAGGTTTTCCTGGAGAACGTGATTCGCGACGCAGTCACCTACACGGA 8363834 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | |||||||| ||| ||||||| | |||||||| |||| || || || Sbjct 8363833 GCACGCCAAGAGGAAGACTGTGACCGCCATGGACGTGGTCTATGCTCTGAAGCGCCAGGG 8363774 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | ||||||| ||||| ||||| Sbjct 8363773 TCGCACTCTTTATGGCTTTGGCGGTTAA 8363746 Score = 132 bits (146), Expect = 8e-27 Identities = 190/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || || |||||||| || ||||||||||| || || Sbjct 8387128 CGCCAAGCGCCACCGTAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 8387187 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 8387188 CCGCCGCTTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGAC 8387247 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| |||| | ||| ||| || | || || || ||||||||| Sbjct 8387248 GCGCGGCGTCTTGAAAGTCTTTTTGGAGAACGTGATTCGCGACGCAGTCACCTATACCGA 8387307 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || || ||||||| | |||||||| |||| || || || Sbjct 8387308 GCACGCCAAGAGAAAGACGGTGACAGCCATGGACGTGGTCTATGCGCTGAAGCGCCAGGG 8387367 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||| ||||| ||||| Sbjct 8387368 TCGCACTCTCTATGGCTTTGGTGGTTAA 8387395 Score = 125 bits (138), Expect = 1e-24 Identities = 188/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || || | | || || || || ||||| || ||||||||||| || ||| Sbjct 8396348 GCCAAGCGCCACCGTAAAGTGCTGCGCGACAATATCCAGGGCATCACCAAGCCGGCCATC 8396289 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || ||||||| ||||| || || ||||| |||| || | |||| || |||| Sbjct 8396288 CGCCGCTTGGCTCGGCGTGGCGGCGTGAAGCGCATCTCGGGGCTCATCTACGAGGAGACG 8396229 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| |||| | ||| ||| || | || || || |||||||||| Sbjct 8396228 CGCGGCGTCTTGAAAGTCTTTTTGGAGAACGTGATTCGCGACGCAGTCACCTATACCGAG 8396169 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| || || ||||||| | |||||||| |||| || || || Sbjct 8396168 CACGCCAAGAGAAAGACGGTGACAGCCATGGACGTGGTCTATGCGCTGAAGCGCCAGGGT 8396109 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | ||||| ||||| ||||| Sbjct 8396108 CGCACTCTCTATGGCTTTGGTGGTTAA 8396082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79052148491916