Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq12986 114 3e-20 seq25194 91.5 4e-13 seq25086 91.5 4e-13 >seq12986 Length=1393 Score = 114 bits (126), Expect = 3e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| |||||||| || ||||||| |||||| || |||||||| ||| Sbjct 947 GCCCAGCAGCTCTGGTACGCCATCATCGAGTCGCAGACTGAGACCGGCACACCCTACATG 1006 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAG 364230 | |||||||| || |||||| | ||| |||||||||| |||| || || || | Sbjct 1007 CTCTACAAAGACTCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGC 1066 Query 364231 AGCAACCTATGTACCGAGATTATTGAATACACC 364263 |||||||||||||| || || | || || ||| Sbjct 1067 AGCAACCTATGTACAGAAATCGTGGAGTATACC 1099 >seq25194 Length=36020201 Score = 91.5 bits (100), Expect = 4e-13 Identities = 122/168 (73%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 111389 TACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACG 111448 ||||||||| || || || | |||||| ||| || || ||||||| ||||| || || Sbjct 29884583 TACAAATGCCAAAGAGCTCTCTGCAAAAGGTGTGAAGATCTGGGATGCTAATGGTTCGCG 29884524 Query 111449 TGACTTTCTAGATT--CAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTT 111506 ||| || || ||| ||| ||| | | || || || || ||| | ||||||||| Sbjct 29884523 TGAGTTCCTGGATAAGCAG--GGTTTCAGCACCAGAGAGGAGGGAGATTTGGGACCAGTT 29884466 Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC 111554 || || ||||| ||| | |||||||| ||||| |||||| |||||| Sbjct 29884465 TATGGTTTTCAGTGGAGGCACTTTGGAGCAGAATACAAAGATATGCAC 29884418 >seq25086 Length=707082 Score = 91.5 bits (100), Expect = 4e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200 ||||||| |||||| || |||||||| ||| | |||||||| || |||||| | ||| | Sbjct 60621 TCGCAGACTGAGACCGGCACACCCTACATGCTCTACAAAGACTCCTGCAACAGGAAGAGC 60562 Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATAC 364260 ||||||||| |||| || || || | |||||||||||||| || || | || || Sbjct 60561 AACCAGCAGAACCTGGGCACCATCAAATGCAGCAACCTATGTACAGAAATCGTGGAGTAT 60502 Query 364261 ACC 364263 ||| Sbjct 60501 ACC 60499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302932579315784