Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq25033 118 1e-21 seq12986 98.7 9e-16 seq25086 95.1 1e-14 >seq25033 Length=1520908 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | || |||||||| | ||| | ||| || ||||| || |||||||| || Sbjct 770107 AGCCACCCCTCAGGCGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 770048 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || ||||||| || || ||||||||||| ||| |||| | | ||||||||| || | Sbjct 770047 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGG 769988 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || ||||||||||| ||| || ||| | | ||| | || || ||| ||| | Sbjct 769987 GAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAA 769928 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 769927 CTTCCAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACAAAGATCTGCATG 769878 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||||||||| | ||| | ||| || ||||| || |||||||| || Sbjct 769878 GCCACCTCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 769819 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| ||| |||| || | ||||||||| || || Sbjct 769818 CAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGTGG 769759 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || |||||||| || ||| || ||| | | ||| | || || ||| ||| | Sbjct 769758 AATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCCAC 769699 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | ||| || || || || || || || || ||||||||| Sbjct 769698 CTCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCATG 769650 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | ||||||||||| || | || || ||||| || |||||||| ||| Sbjct 769650 GCCACCCCTGAGGCGCAGCACTAAGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCGGA 769591 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| ||||| ||||||||||| ||| |||| || | ||||||||| || || Sbjct 769590 CAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCTGGCGG 769531 Query 131127 GATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 769530 AATGCCTTCCTTGTC 769516 >seq12986 Length=1393 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 145676 ACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTC 145735 ||||| || | || | ||||| ||||||||||| ||||| || ||||| || || ||| Sbjct 1089 ACGATTTCTGTACATAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 1030 Query 145736 CTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACG 145795 |||||||| | ||| |||||||||||||| ||| ||| ||||| ||||| ||| | | Sbjct 1029 CTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTGCCGGTCTCAGTCTGCGACTCGATG 970 Query 145796 AT 145797 || Sbjct 969 AT 968 >seq25086 Length=707082 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 145676 ACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTC 145735 ||||| || | || | ||||| ||||||||||| ||||| || ||||| || || ||| Sbjct 60509 ACGATTTCTGTACATAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTC 60568 Query 145736 CTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 |||||||| | ||| |||||||||||||| ||| ||| ||||| ||||| Sbjct 60569 CTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTGCCGGTCTCAGTCTGCG 60620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471864045166080