Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq24458 127 1e-24 seq25201 109 4e-19 seq25188 105 4e-18 seq25135 105 4e-18 seq25211 104 2e-17 seq25192 104 2e-17 seq24985 104 2e-17 seq25173 100 2e-16 seq25134 100 2e-16 seq25189 95.1 8e-15 seq25194 89.7 3e-13 seq25175 87.8 1e-12 >seq24458 Length=12585 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 8709 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 8768 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 8769 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 8803 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 10927 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGGCTATCGGTCTCGT 10986 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 10987 GCCCGTATTTAGCCTTA 11003 >seq25201 Length=4974132 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||| | Sbjct 126052 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 125993 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||| |||||| |||||||| || Sbjct 125992 TCATCCATTCATGCGCATCACTAGTTAGATGATGA 125958 >seq25188 Length=24126677 Score = 105 bits (116), Expect = 4e-18 Identities = 79/93 (85%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| ||| |||||||| ||||| || |||||||| Sbjct 13354328 AAGCCCGTTCCCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 13354387 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||||| ||||||||| | ||||| Sbjct 13354388 TCATCCATTCATGCGTGTCACTAATAACATGAC 13354420 >seq25135 Length=4465896 Score = 105 bits (116), Expect = 4e-18 Identities = 79/93 (85%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||| || |||||||||||||| || |||||||| Sbjct 640277 AAGCCCATTCCCTTGGCTGTGGTTTCACTGGATAGTAGATAGGGACAGTGGGAATCTCGT 640218 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 |||| ||||||| ||||||||||||||||| Sbjct 640217 CCATCCATTCATGCATGTCACTAATTAGATGAC 640185 >seq25211 Length=34478284 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||| |||||||||||| |||||||| ||||| || |||||| | Sbjct 24419861 AAGCCCGTTCCCTTGGTTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 24419920 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||| ||||||||||||||| || Sbjct 24419921 TCATCCATTCATGCGTATCACTAATTAGATGATGA 24419955 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/100 (78%), Gaps = 12/100 (12%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGGGTA------------ 25949 ||||| ||||||||||||||||||| ||| || ||||||||| |||| Sbjct 6174491 AAGCCTGTTCCCTTGGCTGTGGTTTTGCTGGACAGTAGATAGTAGGTAGAGACAGTGGGT 6174432 Query 25950 ATCTCGTTAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 ||||| || |||| |||||||| ||||||||||||||||| Sbjct 6174431 ATCTCATTCATCCATTCATGCGTGTCACTAATTAGATGAC 6174392 >seq25192 Length=28120255 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| || ||||||||||| |||||||||| |||||||| ||||| || |||||| | Sbjct 25867336 AAGACCATTCCCTTGGCTATGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 25867395 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| |||||||||||||||||||| Sbjct 25867396 TCATCCATTCATGCACGTCACTAATTAGATGACGA 25867430 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| | ||||||||||||||||||| | | |||| ||| ||||| || |||| ||| Sbjct 10999401 AAGTCTGTTCCCTTGGCTGTGGTTTTGGTGGATATTAGGTAGGGACCATGGGAATCCCGT 10999342 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| || ||||||||| |||||||| Sbjct 10999341 TCATCCATTCATGTGCATCACTAATTGGATGACGA 10999307 >seq24985 Length=1194348 Score = 104 bits (114), Expect = 2e-17 Identities = 77/90 (86%), Gaps = 5/90 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||||| |||||||||||| |||||||| ||||| || |||||||| Sbjct 200918 AAGCCTGTTCCCTTGGTTGTGGTTTCGCTGGATAGTAGGTAGGGATAGTGGGAATCTCGT 200977 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGAT 25986 | |||| |||||||| |||||||||||||| Sbjct 200978 TCATCCATTCATGCGTGTCACTAATTAGAT 201007 >seq25173 Length=13822994 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||| |||| || |||||||| ||||| || |||||| | Sbjct 1613163 AAGCCCATTCCCTTGGCTGTGATTTCACTGGATAGTAGGTAGGGACAGTGGGAATCTCAT 1613222 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| ||||||||||||||||||| Sbjct 1613223 TCATCCATTCATGCATGTCACTAATTAGATGACGA 1613257 >seq25134 Length=4297848 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||| ||||||||||||||||| |||||||| ||||| || ||| |||| Sbjct 2997507 AAGCCTGTTCCTTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATATCGT 2997566 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | || | |||||| || |||||||||||||||||| Sbjct 2997567 TCATTCATTCATGTGCATCACTAATTAGATGACGA 2997601 >seq25189 Length=23285226 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||| || || |||||||| ||||| || ||||| || Sbjct 872682 AAGCCCATTCCCTTGGCTGTGGTCTCACTGGATAGTAGGTAGGGACAGTGGGAATCTTGT 872623 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| ||||||||| ||||||||| Sbjct 872622 TCATCCGTTCATGCATGTCACTAATCAGATGACGA 872588 >seq25194 Length=36020201 Score = 89.7 bits (98), Expect = 3e-13 Identities = 76/94 (81%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957 ||||| ||| |||||| |||||||| || |||||||| |||| || ||| || || Sbjct 17612128 AGCCCATTCTCTTGGCAGTGGTTTCACTGGATAGTAGGTAGGAACAGTGGGAATATCATT 17612187 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| ||||||| |||||||||||||||||||| Sbjct 17612188 CATCCATTCATGCACGTCACTAATTAGATGACGA 17612221 >seq25175 Length=11523850 Score = 87.8 bits (96), Expect = 1e-12 Identities = 75/93 (81%), Gaps = 5/93 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| | |||||||| ||||||||||| || ||||||| | ||| || |||||||| Sbjct 1039624 AAGACTGTTCCCTTAGCTGTGGTTTCACTGAATAGTAGGTTGGGACAGTGGGAATCTCGT 1039683 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| |||||| || |||||||||||||||| Sbjct 1039684 TCATCCGTTCATGTGCATCACTAATTAGATGAC 1039716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334844280355172