Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq25086 116 7e-21 seq12986 109 1e-18 seq25185 87.8 3e-12 >seq25086 Length=707082 Score = 116 bits (128), Expect = 7e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 244321 CCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT 244380 ||| |||||||| || ||||| || || ||||| || | || ||| |||| Sbjct 57763 CCCTTTGCTGACAGGAGAACCCTCATATGTTTCATAGGGTCCTTGCTCCTTGGCAAGCTC 57822 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC- 244439 |||||| | || | || |||| ||||||||||| |||||| || ||||| | ||| Sbjct 57823 ACAGCTGGCTTCCAAAGCACCGTAATAGATGGTCTCAAAGATCTGCTGGTTCAAG-CGCT 57881 Query 244440 GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCA 244499 |||||| | | ||||||| | ||||| |||||| | || ||||| ||||||| Sbjct 57882 GGGCCTCGGGACTCTCAAAGGGGAACCTCATCAGAATGAAGGCATCTGCCAGGCCCTGCA 57941 Query 244500 CGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGC 244537 | |||||||||||||| | ||| ||| ||||||||||| Sbjct 57942 CCCCGATGCCGATGGGACGGTGGCGCCTGTTGGAGCGC 57979 Score = 100 bits (110), Expect = 5e-16 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 |||||||| | |||| |||| || || || || || ||||| ||||| ||||||||| Sbjct 60485 ACCTCCTCTTTGCTGGTATACTCCACGATTTCTGTACATAGGTTGCTGCATTTGATGGTG 60544 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 ||||||| ||| || ||| ||| |||||||| ||| |||||||||||| |||| Sbjct 60545 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTG 60604 Query 244826 CCGGTCTC 244833 |||||||| Sbjct 60605 CCGGTCTC 60612 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 245008 CTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTC 245067 || ||||||||| || || ||||| || || ||| ||||| |||| | ||||| || Sbjct 62360 CTTCATGAAGAGATCAGGAATCCAAAGCGCAAAGAAAAGGTCTCTGGCTCGTTGCTCTTC 62419 Query 245068 CGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCAT 245127 |||||||||||| ||| |||| ||| ||||||| ||| | ||||||||||||| Sbjct 62420 TTTCCCAGTGTTCTTCTTCAAGTCCAGAAACTCAAAGATGTCCAAATGCCAGGGCTCCAG 62479 Query 245128 GTAGA 245132 ||||| Sbjct 62480 GTAGA 62484 >seq12986 Length=1393 Score = 109 bits (120), Expect = 1e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 |||||||| | |||| |||| || || || || || ||||| ||||| ||||||||| Sbjct 1113 ACCTCCTCTTTGCTGGTATACTCCACGATTTCTGTACATAGGTTGCTGCATTTGATGGTG 1054 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCC 244825 ||||||| ||| || ||| ||| |||||||| ||| |||||||||||| |||| Sbjct 1053 CCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTG 994 Query 244826 CCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTG 244885 |||||||| ||| | ||| || | || |||||| | | ||||| ||| |||| Sbjct 993 CCGGTCTCAGTCTGCGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCCTG 934 Query 244886 CGAGCCTTGCCCTCTGCCTCGTAGC 244910 || | ||||| |||||||| Sbjct 933 CGCACACGGCCCTGCTTCTCGTAGC 909 >seq25185 Length=22297774 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| |||| |||||| | || || || ||||||||||| ||||| |||| || Sbjct 15031474 GGTGAGAGAGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCCTTTGCT 15031415 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | || || ||||| ||| ||| || |||||| || || || ||||| || ||||| Sbjct 15031414 GCTATATTTTGGCTGAAGAAGAGGGGCCTGATGCCAGGGCTGACTTTCTCCAATGAACTT 15031355 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||| || |||| Sbjct 15031354 ATTAGCAGAGATGAGG 15031339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944041591501120