Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq25086 84.2 2e-11 seq12986 84.2 2e-11 seq25063 82.4 7e-11 >seq25086 Length=707082 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 146679 ATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTT 146738 ||||| ||| || || | || ||||||||||| |||||| |||||| || | ||||| Sbjct 60502 ATACTCCACGATTTCTGTACATAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTT 60561 Query 146739 ACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 || | ||||||||| ||| |||||||||||||| ||| ||||| || Sbjct 60562 GCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTGCCGGTCTC 60612 >seq12986 Length=1393 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 146679 ATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTT 146738 ||||| ||| || || | || ||||||||||| |||||| |||||| || | ||||| Sbjct 1096 ATACTCCACGATTTCTGTACATAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTT 1037 Query 146739 ACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 || | ||||||||| ||| |||||||||||||| ||| ||||| || Sbjct 1036 GCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTGCCGGTCTC 986 >seq25063 Length=1621140 Score = 82.4 bits (90), Expect = 7e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 126924 CTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGA 126983 ||||||| |||||||| || || |||||| ||| || ||||| |||||||| ||| Sbjct 1224494 CTTTTTGGATATTGTAGTCAGACAGCGTGCGCCCATCTTCGAGCTGCTTTCCAGCAAAGA 1224553 Query 126984 TCAATCGCTGCTGATCGGGAGGTATGCC 127011 ||||||||||||| || ||||| ||||| Sbjct 1224554 TCAATCGCTGCTGGTCAGGAGGAATGCC 1224581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475350945922880