Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq9637 233 3e-56 seq25159 147 3e-30 seq25150 107 3e-18 >seq9637 Length=1534 Score = 233 bits (258), Expect = 3e-56 Identities = 684/1047 (65%), Gaps = 39/1047 (4%) Strand=Plus/Plus Query 78258 CCAAAACACGACCAAGCCGCCAGTTGTTTCATACACTGTAACATTTCCAGACTGCACGTA 78317 ||| ||||| |||| ||||| || |||||| | || | || || || ||| |||| Sbjct 216 CCAGAACACCACCAGACCGCCTGTGGTTTCAAAAACCGACACGTTACCGTACTTTTCGTA 275 Query 78318 AGTTGAATTATATGTTGTGTTGAAAATTTCTTGCAGCTTTCTTTCAGCCTCATCCTTTAT 78377 ||| ||| || | | |||||| || | ||| ||||| || ||||| || || Sbjct 276 TGTTTGATTGTACGAGGCGTTGAAGATCTGTTGTAGCTTATTTAGAGCCTGAT----TAC 331 Query 78378 GCAT----TCCAAAGCTGGATCAGAATCATTAACCGGAGTCTTTTTAGACAAGAATGTGG 78433 || | ||||| | || || || || || || ||||||| || || | Sbjct 332 GCGTCTAGTCCAACACAGGGTCGGACATGTTCACTTCTTGTTTCTTAGACAGAAAAGTTG 391 Query 78434 CAGTCATACTACCAGATGTAAAATGATATGTATCCTCAGCTTCCGAACGAATAGTGCGTT 78493 ||||||| || |||| | ||| || || | || || ||||| ||||||||||| |||| Sbjct 392 CAGTCATTTTAGCAGAAGAAAAGTGGTACGAGTCTTCGGCTTCGGAACGAATAGTACGTT 451 Query 78494 CTGATTGTTCCCAAAAAGTGAATTGACAGGTACTGTTGTTCTGATCCTCAATATCCCAAG 78553 | || |||||| || |||| |||||||| || |||| |||| |||||||| | Sbjct 452 CCGAGGCTTCCCAGAAGGTGAGCTGACAGGTGACATTCTTCTCGTCCTGTATATCCCAGG 511 Query 78554 ACATTAGCGAATCTGCTCTTTGaaaaaaaGCCATTAAACGATGAGTTTTTTCTGGAACAT 78613 | || | ||| ||||| | || || |||||||| || | || || | | | | || Sbjct 512 AGATCACCGAGTCTGCACGTTCAAGAAAAGCCACCAACCTGTGGGTCTCTGGCGCAGAAT 571 Query 78614 TTTCTCGTCCATAGTATTCCACCATGGAATAATTTTTGTAAATATGAAACTTATCTTGGT 78673 | ||| |||| ||| || || | || || | |||| |||||| || || Sbjct 572 TCGCTCTTCCAAAGTCAGAAACAATAGTGTAGTTCGGGAAAATGAAAAACTTGTCGGCGT 631 Query 78674 TTTCACCAAAAT-----GT-TTGTGATTGCTGCCGTTGTAAAAAGGAGAGATGTCTACCC 78727 |||| ||||| | || ||| ||||| | ||||| || |||||||| ||||| ||| Sbjct 632 TTTCTCCAAAGTAGCTGGTATTGCGATTGGTTCCGTTATAGAAAGGAGAAATGTCAACCA 691 Query 78728 ATTCGCCGCCAGAAGTCACaaaaaaaTCATATGGGTATTTTGATCGCGCAGTCGTCACGG 78787 || || || || | ||||||| || || || || || |||||||| || | || Sbjct 692 CGTCACCCGTGGACGTGGCGAAAAAATGGTAAGGATACTTGGAACGCGCAGTAGTGATGG 751 Query 78788 TCACCATGCAGTTTACATTAGAGCTTGTTGTATACAACCACGTGCTACCGGCCTTGTGCC 78847 ||||||| ||||| | |||| || | ||| | ||| ||||||||| |||||| Sbjct 752 TCACCATACAGTTCAGATTACAGGTCTCACGATAGAGCCAGGTGCTACCGCGGCTGTGCC 811 Query 78848 AAAGTTCTTTCACGGTTACGAAGCGCGAAG-TGTGCGTGTTAGAGTAGTCTTCCAGCAAG 78906 | | || || || || ||| | || || | |||| ||||| || || || || |||| Sbjct 812 ACTGATCCTTGACCGTCACGTAACG-GATGCTGTGGGTGTTGGAATAATCGTCGAGCATT 870 Query 78907 AGCATA---GTTTCATTTACAAAGCTGTCTTTATGATAGGTATCATAGACTTTTCCTGAC 78963 | | | |||| ||| || ||||||| ||||||| | | | || | |||| Sbjct 871 ACTAGACGCGTTTTGTTTTCATAGCTGTCCCTATGATACGCCACGAAAACCGTGCCTG-- 928 Query 78964 ATTGTTCTCTTCACGGAGTTGTAACATCTGTTTAAC---------CTGTTAATGTAATGC 79014 || | ||| | ||||| | |||| || ||||| || | ||| Sbjct 929 ------CT-ATAACGCGGCTGTAAGAACTGTAGCACTGACTGTGGCTGTTGATATGATGA 981 Query 79015 ACTTCCCACAGTGGAACAGGCAAATGCTCCACAGTTTGT-CCTAACATGTAATTAACATA 79073 | ||||||| ||| | || | ||| ||| | || | || ||| | | Sbjct 982 ATCTCCCACATAGGAGGCGCCACGTATTCC-GTGTTGCTGCCCAGCAGATAAGTGGTGTG 1040 Query 79074 AATATAAGAATAACTTTGACGCTGCGTTAAAACCTTCTGATACACAGTCACTTTGAAGGT 79133 || |||| || || |||| ||| ||||||||||| || || || || ||||| Sbjct 1041 GATGTAAGCGTAGCTACGACGAAACGTCAAAACCTTCTGGTAGACCCGTACCTTAAAGGT 1100 Query 79134 ATACGGCTTGATGTTCCGTTTGTACACCACCATAATACCCTCATCGAAATCTTCTTTTGT 79193 | || |||||| |||||||| |||||||| || ||||| || | ||||| || | Sbjct 1101 GTGCGCGACGATGTTGCGTTTGTAGACCACCATGATGCCCTCGTCCAGGTCTTCATTGAT 1160 Query 79194 GGGCTTGAATGATTCACATTCAATGTTCTGTTCAAACCGAAGAAGATCCGTCCCCTGAGC 79253 |||||| | | || | || || ||||||| |||| ||||||||| ||||| || Sbjct 1161 GGGCTTCATCGGGGTGCAGACGATATTACGTTCAAAGCGAATAAGATCCGTACCCTGGGC 1220 Query 79254 CATTGAGCATACGCGATATGGAAACTT 79280 ||| || || |||||||| || |||| Sbjct 1221 CATGGAACACACGCGATAGGGGTACTT 1247 >seq25159 Length=8155271 Score = 147 bits (162), Expect = 3e-30 Identities = 210/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || ||| | Sbjct 7937716 GGAAAGCTGTGAAGGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGATGCAG 7937775 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || |||||||| || ||||||||| | |||| Sbjct 7937776 TATTGATTATTTCAAATCCAACTTTTCCACCAAAGGTGCTAGGCTTCCAGTACTCAGGGG 7937835 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || ||||||| ||||||| || || || || || | ||| | || Sbjct 7937836 AGCAGATAGCATTTCCCATGAGTCCTTTCAGAGAGAATGGTGCTCCAATCTCCACCATTG 7937895 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||||||||||||||| || || || ||||| || | | ||| | ||| || || | Sbjct 7937896 TTTCACCGAAGATGGCACCTGGTCGTGGCTTTTCTACAAGAAGGCCTGGGTACAGCTCCA 7937955 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 7937956 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCT 7938011 Score = 134 bits (148), Expect = 2e-26 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9727 ATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGA 9786 || || | ||| ||||| |||| |||||| ||| |||| || ||||| || ||||| || Sbjct 7939768 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGGTGCTCCTGTTTCAGG 7939827 Query 9787 ACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGC 9846 | || ||||||| |||||| || ||||||||||| || || |||||||| | || || Sbjct 7939828 ATGTCACAGACCCGGTTGTGCTCCCTCAGCCATATTGTAGCATACATCATCAGGCCTGGG 7939887 Query 9847 ACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCA 9906 || ||||||||||| || | ||| || | ||| ||| | || || | | || | Sbjct 7939888 ACCAAACCAAACACCTCTTGCCCAACAGAAAACTGCAAGTGTTCTGGTATGTGAGGAGGG 7939947 Query 9907 TACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACC 9966 || | ||| | |||| || || || || || || ||||||||||| || ||||| | | Sbjct 7939948 TAGATCATCTCTGCCTGAGTGTCCTTCACTGTTGGTGGATACATTTCTCCATCAATCATC 7940007 Query 9967 TG 9968 || Sbjct 7940008 TG 7940009 >seq25150 Length=5065642 Score = 107 bits (118), Expect = 3e-18 Identities = 208/305 (68%), Gaps = 4/305 (1%) Strand=Plus/Plus Query 8876 ACTCGGAACGCGGCCAACGGACATCCCTTCACATTG--GCACAAATGAGGGACTGAATGG 8933 || ||||||| | |||| || |||||||||| ||||| | || || | | Sbjct 3895173 ACACGGAACGACACATACGGGCACTTCTTCACATTGAGGCACACA--AGCTTCTTGAGTG 3895230 Query 8934 TTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACG 8993 ||| || ||||| || || || || | || || ||||| |||||||||||||| Sbjct 3895231 ATGCTGTCTTCACTATCTCAAAGCCAGTTGCTCCACCAAAGGTACTGGGTTTCCAGTATT 3895290 Query 8994 CCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGA 9053 | |||||||||||| ||| | | ||||| |||| |||||| ||||| || | ||| | Sbjct 3895291 CTGGGGAGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAATGGAGCTCCAATCTCCA 3895350 Query 9054 TGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGA 9113 ||||| || || ||||| || ||| | ||||| || | | ||||| | |||| Sbjct 3895351 CCATGCTTTCCCCAAAGATTCCATTGGGTTGGGGTTTCTCAAGCAGCAAGCCCGGATAGA 3895410 Query 9114 GTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCAC 9173 || | ||| || | ||| ||||| || ||| || || || ||| |||| | ||| | Sbjct 3895411 ACTCCAGAGCGTCAATGTCTCCATATAGCTCTTGCAGTTCTGCTGCTTTCTCTTCCTCTC 3895470 Query 9174 CTACA 9178 || || Sbjct 3895471 CTGCA 3895475 Score = 93.3 bits (102), Expect = 6e-14 Identities = 169/244 (69%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 9487 ATGAGGATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCT--ATGC 9544 ||||| ||||| ||||||| | ||| || ||||| | |||| | | ||| ||| Sbjct 3896533 ATGAGCATGGAGGTGTTGTAGAGGAACTGCTCGTAGCTGTACTCTTC--CCCCTGGATGA 3896590 Query 9545 GAAAATCATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTC 9604 || || |||| ||| ||||||| | ||||| |||||||| |||| || | Sbjct 3896591 TGAAGGAGTCGGGCATCAGCCCATGCCAGTGATAGAGCTGGTTGAACTCCACCGCGATGC 3896650 Query 9605 GGTTCTGGTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGT 9664 | ||| ||||||| || || || ||||| | ||| |||||||| | || | || Sbjct 3896651 GATTCCGGTACTGGAATTGTGTCCCAAACAGCAGCTCGGGGTCAAACTTGAGGCTCAGGT 3896710 Query 9665 GGTACCCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC-GGTA 9723 |||||||||||| |||||||| || | | || | || |||||||| ||||| |||| Sbjct 3896711 AGTACCCGCTGAGGTGCTGGACGTAGTCTTCAATGACGATCTTAATGGTCTCCCCTGGTA 3896770 Query 9724 ATGA 9727 | || Sbjct 3896771 AAGA 3896774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723499917120800