Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq25033 127 5e-24 seq25063 89.7 1e-12 >seq25033 Length=1520908 Score = 127 bits (140), Expect = 5e-24 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||| || || ||||| || || || || ||||| || | || || | ||||||||| Sbjct 770087 ACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 770028 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || | || ||||| || ||||||||||||||||| || Sbjct 770027 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTGTCCTGG 769968 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108 || || ||| || |||||||||||||| ||| || ||||| ||||| | ||| Sbjct 769967 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACTTCCAGGGTGATGGTC 769911 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || | || || || || | ||||| Sbjct 769910 TTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 769879 Score = 123 bits (136), Expect = 6e-23 Identities = 163/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || | || ||||| || || ||||| || || || || ||||| || | || || Sbjct 769872 TCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGT 769813 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || |||||||| | | || |||||||| |||||||| Sbjct 769812 GCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGAATGCC 769753 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095 |||||| || || || || ||| || |||||||||||||| ||| ||||| || Sbjct 769752 TTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCCACCTC 769696 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||||| ||||||| || || || || | ||||| Sbjct 769695 CAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 769651 Score = 114 bits (126), Expect = 3e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979 ||||| | || || | ||| ||||| || || || || || ||||| |||| ||||| Sbjct 769643 CTGAGGCGCAGCACTAAGTGCAGAGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTG 769584 Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | ||||| || |||||||| || |||||||| | || || |||||||| ||||||||| Sbjct 769583 CGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAATCTCTGCTGGTCTGGCGGAATGCCT 769524 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC 195080 || ||||| || || || ||| || ||||| |||||||| Sbjct 769523 TCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTC 769483 Score = 87.8 bits (96), Expect = 4e-12 Identities = 109/147 (74%), Gaps = 7/147 (5%) Strand=Plus/Minus Query 194998 TTACCTGCGAAGA-TAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||||| | || | || ||||| |||||||||||||||||||| || ||||| Sbjct 769336 TTGCCAGCGAAGAATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATTTT 769277 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCC 195113 | ||| || |||||||||||||| ||| || || |||||||| | ||||| || Sbjct 769276 TGCCTTCACATTCTCAATGGTGTC---ACTGGGCTCAACCTCAAGGGTGATGGTCTTGCC 769220 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || || || || | ||||| Sbjct 769219 AGTAAGGGTCTTCACAAAGATCTGCAT 769193 >seq25063 Length=1621140 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 194951 CTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGA 195010 ||||||| |||||||| || | || || | |||||||||||||||||| || || |||| Sbjct 1224494 CTTTTTGGATATTGTAGTCAGACAGCGTGCGCCCATCTTCGAGCTGCTTTCCAGCAAAGA 1224553 Query 195011 TAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 | | ||| || ||||| |||||||||||| Sbjct 1224554 TCAATCGCTGCTGGTCAGGAGGAATGCCT 1224582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109123205545604