Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq25179 143 2e-28 seq25024 122 7e-22 >seq25179 Length=14121063 Score = 143 bits (158), Expect = 2e-28 Identities = 361/546 (66%), Gaps = 2/546 (0%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || | || ||||| || || || ||||| | || |||| ||| Sbjct 11468131 GCAATCGGCATCGACCTGGGCACCACGTACTCCTGCGTGGGTGTCTTCCAGCATGGCAAA 11468072 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || || || || ||||| ||| |||| || || ||||| | ||||| Sbjct 11468071 GTGGAGATCATCGCTAACGACCAAGGGAACCGAACCACACCCAGCTATGTGGCCTTCACT 11468012 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | ||||||||||||| || | || | || || |||||||| Sbjct 11468011 GATACAGAGCGCCTCATTGGTGATGCAGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 11467952 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || ||||||||||||||| | || || | | | | |||| | || || ||| | Sbjct 11467951 ACCATCTTTGATGCTAAACGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCG 11467892 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGCT 550291 ||||||||||| ||||| |||| | || |||| ||| || || | | ||| Sbjct 11467891 GATATGAAGCACTGGCCCTTCCGTGTGGTGAATGACAGTGGCAAGCCCAAGGTGCAAGTG 11467832 Query 550292 ACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 | |||| | | | || | ||| | ||||| | || |||||||| ||| Sbjct 11467831 GAGTACAAAGG-TGAGATGAAGACTTTCTTCCCAGAGGAGATCAGCTCTATGGTCCTAAC 11467773 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAAC 550410 || ||||| | | || || | | | || | |||| | |||| || || || Sbjct 11467772 CAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAAGTGCAGAATGCTGTCATTAC 11467713 Query 550411 TGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGC 550470 || || || || || |||||||| || || || ||||| ||||||||||| || | Sbjct 11467712 AGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCTACCAAAGATGCTGGCACCATCAC 11467653 Query 550471 TGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACT 550530 ||| |||||||| | |||||||||||||| || || || ||||| | || ||||| || Sbjct 11467652 TGGTCTTAATGTGATGCGTATTATCAATGAGCCCACAGCAGCTGCTATAGCCTATGGTCT 11467593 Query 550531 TGATAA 550536 || || Sbjct 11467592 GGACAA 11467587 Score = 125 bits (138), Expect = 6e-23 Identities = 316/478 (66%), Gaps = 2/478 (0%) Strand=Plus/Minus Query 552114 CATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTA-AG 552172 || || |||||||| || ||||| ||||| | || || || || | | ||||| || Sbjct 11467147 CAAGAGATTGTGCTGGTGGGTGGCTCTACTCGTATCCCCAAGATCCAGAAGCTGTTACAG 11467088 Query 552173 TTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTA 552232 ||| || |||||| ||| | | || | || | || || |||||||||||||| || Sbjct 11467087 GACTTCTT-CAATGGCAAAGAGCTCAACAAGAGCATCAACCCTGATGAGGCTGTTGCTTA 11467029 Query 552233 TGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATAT 552292 ||||| ||| | |||||||||||||| ||| | | ||| || | || || | Sbjct 11467028 CGGTGCTGCAGTGCAAGCAGCTATTCTCATGGGAGACAAGTCTGAGAATGTGCAGGATCT 11466969 Query 552293 TGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGAC 552352 | || | ||||| || || || || || || | || |||| ||| || | ||||| Sbjct 11466968 GCTGCTGTTGGATGTCACCCCCCTGTCCCTGGGCATTGAGACAGCTGGTGGAGTGATGAC 11466909 Query 552353 TAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTA 552412 | ||| ||| | | || || |||||||| ||| || ||| || | || || Sbjct 11466908 TGCTCTCATCAAGCGCAACACCACTATTCCCACCAAACAAACTCAGACCTTCACCACCTA 11466849 Query 552413 TTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAA 552472 |||||| || || | ||| | || | | ||| || ||||| | || || Sbjct 11466848 TTCAGACAACCAGAGCAGTGTCCTGGTCCAGGTATATGAGGGTGAAAGGGCTATGACAAA 11466789 Query 552473 AGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGT 552532 || || || || || | ||| | || || || || || || || |||||||| Sbjct 11466788 GGACAACAACTTGCTGGGCAAGTTTGACCTAACGGGCATCCCCCCAGCACCCCGTGGAGT 11466729 Query 552533 ACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCT 552590 || || || || || ||||| ||||||||||||||||| ||| ||||||| | |||| Sbjct 11466728 CCCCCAGATCGAGGTCACTTTTGATATCGATGCCAATGGTATTCTGAATGTCAGTGCT 11466671 >seq25024 Length=1579651 Score = 122 bits (134), Expect = 7e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | ||||| ||||| ||||| |||||||| || ||||| ||||| ||||||| Sbjct 1096548 ATGCTGTAGTGACTGTCCCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACAAAAGATG 1096607 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||| || || ||||| || || ||||||||||| || || |||||||| Sbjct 1096608 CTGGAACCATTGCAGGGCTCAATGTCCTGCGAATTATCAATGAGCCAACAGCTGCTGCGA 1096667 Query 550518 TTGCATATGGACTTGATAAA 550537 | || ||||| || || ||| Sbjct 1096668 TAGCCTATGGTCTGGACAAA 1096687 Score = 95.1 bits (104), Expect = 1e-13 Identities = 133/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | || || ||| | || ||||| || ||||||||||| | ||| |||| || Sbjct 1095594 AGCTGTCGGAATCGATCTTGGCACCACCTACTCCTGTGTTGGTGTATTCCAACATGGGAA 1095653 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| |||||||||||||| |||||||| || |||||| || || | ||||| Sbjct 1095654 GGTGGAAATCATTGCCAATGATCAGGGTAACAGGACCACTCCAAGCTACGTGGCCTTCAC 1095713 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACC 550168 || || || || | || ||||| ||||| | |||| || || ||||| ||| Sbjct 1095714 AGATACAGAGAGGTTGATCGGCGATGCCGCAAAGAACCAAGTTGCAATG--AATCCAACC 1095771 Query 550169 AATAC 550173 ||||| Sbjct 1095772 AATAC 1095776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027962675733880