Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq12986 109 1e-18 seq25086 100 5e-16 seq25193 91.5 3e-13 >seq12986 Length=1393 Score = 109 bits (120), Expect = 1e-18 Identities = 122/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||||| ||| || || || |||||||||||| |||||||||||||||||| ||| Sbjct 1098 GTATACTCCACGATTTCTGTACATAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGG 1039 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 || ||| |||| || || ||||||||||||||||| | |||||||| ||| Sbjct 1038 TTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTGCCGGTCTCAGTCTGC 979 Query 213648 GACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCC 213690 ||| | | || | |||||| | | |||||| ||||||| Sbjct 978 GACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCACCC 936 >seq25086 Length=707082 Score = 100 bits (110), Expect = 5e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||||| ||| || || || |||||||||||| |||||||||||||||||| ||| Sbjct 60500 GTATACTCCACGATTTCTGTACATAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGG 60559 Query 213588 TTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 || ||| |||| || || ||||||||||||||||| | |||||||| Sbjct 60560 TTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTAGGGTGTGCCGGTCTC 60612 Score = 95.1 bits (104), Expect = 2e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 213174 TAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTT 213233 ||||| || ||||||||||| ||||| ||| || | || ||| |||| |||||||| Sbjct 57797 TAGGGTCCTTGCTCCTTGGCAAGCTCACAGCTGGCTTCCAAAGCACCGTAATAGATGGTC 57856 Query 213234 TCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGT 213293 ||||| |||| | ||| | || |||||| || | ||||| | | |||| | Sbjct 57857 TCAAAGATCTGCTGGTTCAAGCGCTGGGCCTCGGGACTCTCAAAGGGGAACCTCATCAGA 57916 Query 213294 TGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTG 213340 ||| |||| ||||| ||||| ||||||||||||||||| | ||| Sbjct 57917 ATGAAGGCATCTGCCAGGCCCTGCACCCCGATGCCGATGGGACGGTG 57963 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/153 (73%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCT- 213871 |||| || |||||| || || || | ||| ||||| ||| ||||| |||| ||| | Sbjct 62355 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGCGCAAAGAAAAGGTCTCTGG--CTCGTT 62412 Query 213872 -CTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACG 213930 ||| || |||| ||| || || || ||||| |||||||||||| ||||| | Sbjct 62413 GCTCTTCTTTCCCAGTGTTCTTCTTCAAGTCCAGAAACTCAAAGATGTCCAAATGCCAGG 62472 Query 213931 GCTCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||||| |||||||||||| || || || |||| Sbjct 62473 GCTCCAGGTAGATGGCAAAAGCCCCAGGTCTCT 62505 >seq25193 Length=27607347 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 48164 CTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAA 48223 |||||||| |||| || || ||| |||||||| | || || | ||| ||||| ||| Sbjct 23153473 CTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTTTCAGCCAAAAA 23153414 Query 48224 ATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGC 48273 |||| || |||||||||||||||||||| || |||||||| || || || Sbjct 23153413 ATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAGC 23153364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931239227438080