Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Melopsittacus_20undulatus_20[refseq_20GCF_5F000238935.1_202012-01- 02] 25,212 sequences; 1,117,373,619 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq25193 87.8 4e-12 seq25033 86.0 1e-11 >seq25193 Length=27607347 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 49846 CCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTT 49905 |||| || ||| || | ||| ||| |||||| | ||| |||||||||||||| |||| Sbjct 23153484 CCTCATCTCTACTGATGAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTTT 23153425 Query 49906 TAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATACCCTCGACACACGCAAATG 49965 | |||||||| |||||||||||| | ||| ||||| || || || || ||||| | Sbjct 23153424 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAGAAGAAGATTCCTTCCACTGCTGCAAAAG 23153365 Query 49966 CTATTA 49971 ||| || Sbjct 23153364 CTACTA 23153359 >seq25033 Length=1520908 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || | ||| | || | || || ||| || || ||| Sbjct 769880 ATGCCACCTCTCAGACGCAGCACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCA 769821 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| |||| |||| || || ||||| ||||| || ||||| || || ||| Sbjct 769820 GACAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCTGGT 769761 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||||||||| || || || || ||||| || | || | || Sbjct 769760 GGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCC 769701 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || || || | || || | ||| |||||||| Sbjct 769700 ACCTCCAGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 769651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984161984656200